View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19527_high_6 (Length: 280)
Name: NF19527_high_6
Description: NF19527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19527_high_6 |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 133 - 280
Target Start/End: Complemental strand, 11157845 - 11157698
Alignment:
| Q |
133 |
ttgaattgaaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccattatca |
232 |
Q |
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| T |
11157845 |
ttgaattgaaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccattatca |
11157746 |
T |
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| Q |
233 |
tcaccagaatcatcataatcatcctcataatcttcaacataatccaat |
280 |
Q |
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| T |
11157745 |
tcaccagaatcatcataatcatcctcataatcttcaacacaatccaat |
11157698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 141 - 280
Target Start/End: Complemental strand, 11164926 - 11164787
Alignment:
| Q |
141 |
aaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccattatcatcaccaga |
240 |
Q |
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| T |
11164926 |
aaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccattatcatcaccaga |
11164827 |
T |
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| Q |
241 |
atcatcataatcatcctcataatcttcaacataatccaat |
280 |
Q |
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| T |
11164826 |
atcatcataatcatcctcataatcttcaacacaatccaat |
11164787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 280
Target Start/End: Original strand, 4703324 - 4703426
Alignment:
| Q |
169 |
tcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccattatcatcaccagaatcatcataatcatcctcataatcttca |
268 |
Q |
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| T |
4703324 |
tcacattaacgattttagtgacctttctttcacgggtttcctcattctcctcttcccattatc---------atcatcatattcatcctcataatcttca |
4703414 |
T |
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| Q |
269 |
acataatccaat |
280 |
Q |
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| T |
4703415 |
aaataattcaat |
4703426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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