View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19527_low_2 (Length: 404)
Name: NF19527_low_2
Description: NF19527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19527_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 45025444 - 45025057
Alignment:
| Q |
1 |
tggcagttcaaagaaattattaccagaccatgagagctgaaggtatagcaagcctaaggaaaacaaagagatcctgcagagctctctttgaaaaccctgt |
100 |
Q |
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| T |
45025444 |
tggcagttcaaagaagttattaccagaccatgagagctgaaggtatagcaagtctaaggaaaacaaagagatcctgcagagctctctttgaaaaccctgt |
45025345 |
T |
|
| Q |
101 |
ccatgtttgtttacaagtagaagaaaattttacatagagtgaaatcaacaacacattgacccaataacatatagaattggatatagctgcccctttactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45025344 |
ccatgtttgtttacaagtagaagaaaattttacatagagtgaaatcaacaacacattgacccaataacatatagaattggatatagctgcccctttactt |
45025245 |
T |
|
| Q |
201 |
ccaagcttaaattcaaaaaccaaaagccaacacaaaagggtatgaagcaaagctgcaatcccagaagttatcaccattgggaggacaatgttttgtgttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45025244 |
ccaagcttaaattcaaaaaccaaaagccaacacaaaagggtatgaagcaaagctgcaatcccagaagttatcaccattgggaggacaatgttttgtgttt |
45025145 |
T |
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| Q |
301 |
gcaagaacttgagaatgcactggagaggaccatatgcgaacaaactcggtatcagaaacaacgcgtatgaaccagcttccttggatat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45025144 |
gcaagaacttgagaatgcactggagaggaccatatgcgaacaaactcggtatcagaaacaacgcgtatgaaccagcttccttggatat |
45025057 |
T |
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