View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19527_low_7 (Length: 261)
Name: NF19527_low_7
Description: NF19527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19527_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 24575400 - 24575539
Alignment:
| Q |
1 |
aatgatatctaccaaaactatcaaaagtagtaataaatctgtgtgtgtttaccatcaaaatcatggtgataacaaagtgacctaccaaaaatctatgggt |
100 |
Q |
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| T |
24575400 |
aatgatatctaccaaaactatcaaaagtagtaataaatctgtgagtgtt-accatcaaaatcatggtgataacaaagtgacctaccaaaattttatgggt |
24575498 |
T |
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| Q |
101 |
aaagcaattggatcagtgaacaaaaacatcgatgttaaatt |
141 |
Q |
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| T |
24575499 |
aaagcaattggattagtgaacaaaaacatcgatgttaaatt |
24575539 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 24575551 - 24575593
Alignment:
| Q |
201 |
gtgacctacaagacttatgtggtacataaatgatttaagttct |
243 |
Q |
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| T |
24575551 |
gtgacctacaagacttatgtggtacataaatgatttaagttct |
24575593 |
T |
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