View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19528_high_1 (Length: 706)
Name: NF19528_high_1
Description: NF19528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19528_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 22 - 688
Target Start/End: Original strand, 28320360 - 28321026
Alignment:
| Q |
22 |
taattttcttcaaaattgaagtaagcaagcatcaccttaaggtatacatcaatagcatgatataaaccatcatccaatggcctagcataatcaggaattg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320360 |
taattttcttcaaaattgaagtaagcaagcatcaccttaaggtatacatcaatagcatgatataaaccatcatccaatggcctagcataatcaggaattg |
28320459 |
T |
|
| Q |
122 |
aagcagcaagagattgaaacttaggcaacttcaaattaacatcaagagccacctcagcaagatatgcatccaacaaattagccacaattgtcataggtgt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320460 |
aagcagcaagagattgaaacttaggcaacttcaaattaacatcaagagccacctcagtaagatatgcatccaacaaattagccacaattgtcataggtgt |
28320559 |
T |
|
| Q |
222 |
caatgcatcaactccaccaatcaaggatccttcaccagttatacataatggagtagttgatgttgttccaggattatacattgacataaaatgatcaata |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320560 |
caatgcatcaactccaccaatcaaggatccttcaccagttatacataatggagtagttgatgttgttccaggattatacattgacataaaatgatcaata |
28320659 |
T |
|
| Q |
322 |
attctttgaatacaatctatatcataaagtgtctcaactgaatatcccatatttggtatcaaaatatccacaagttcaacttcatcaagctgtgaaccaa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320660 |
attctttgaatacaatctatatcataaagtgtctcaactgaatatcccatatttggtatcaaaatatccacaagttcaacttcatcaagctgtgaaccaa |
28320759 |
T |
|
| Q |
422 |
cccttttctccaaattttctatgcatgatgaacttgcatgtaatatcatagctgttcttagcaacctaagaagatacttagaagggattacacnnnnnnn |
521 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320760 |
cccttttctccaaattttctatgcatgatgaacttgcatgtaatatcatagctgttcttagcaacctaagaagatacttagaagggattacacttttttt |
28320859 |
T |
|
| Q |
522 |
attaggaatcaaccctacaatttcttccaataatgccctttgatttccttctgaacttctacttggtgttgtcccttgactaacactagttttgtcattg |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320860 |
attaggaatcaaccctacaatttcttccaataatgccctttgatttccttctgaacttctacttggtgttgtcccttgactaacactagttttgtcattg |
28320959 |
T |
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| Q |
622 |
aaacttgattgtctattcatcaaaggtatatatctcctaagataacatattaatgatgcagcaacat |
688 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320960 |
aaacttgattgtctattcatcaaaggtatatatctcctaagataacatattaatgatgcagcaacat |
28321026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 304 - 503
Target Start/End: Complemental strand, 5950337 - 5950138
Alignment:
| Q |
304 |
gacataaaatgatcaataattctttgaatacaatctatatcataaagtgtctcaactgaatatcccatatttggtatcaaaatatccacaagttcaactt |
403 |
Q |
| |
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||||||||||| || | ||| || ||||||||||||||||||||||| ||||| || || |||||||||||||| || | || |||||||||| | | | |
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| T |
5950337 |
gacataaaatggtccagaatcctctgaatacaatctatatcataaagcgtctcgaccgagtatcccatatttggaatgagaagatccacaagtgaagcct |
5950238 |
T |
|
| Q |
404 |
catcaagctgtgaaccaacccttttctccaaattttctatgcatgatgaacttgcatgtaatatcatagctgttcttagcaacctaagaagatacttaga |
503 |
Q |
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||| || || | || ||||||||||| ||||| ||| ||||||||| ||||||| |||||||||| || |||| ||||||| ||| |||| |||||| |
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| T |
5950237 |
gatctagttgagctcctacccttttctctaaattctctttgcatgatggacttgcacgtaatatcattgcggttcggagcaaccgaaggagatgcttaga |
5950138 |
T |
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