View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19528_high_17 (Length: 243)
Name: NF19528_high_17
Description: NF19528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19528_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 21491907 - 21492118
Alignment:
| Q |
17 |
aacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaacccatggaactgttcccattccaggc |
116 |
Q |
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| T |
21491907 |
aacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaacccatggaactgttcccattccaggc |
21492006 |
T |
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| Q |
117 |
gagaagaatatgatgtagagtgcgagggctaatatagcgatccaaccaaagttgctaggacaaccttttgtgtaccatgctctatgatcaacgccacaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21492007 |
gagaagaatatgatgtagagtgcgagggctaatatagcgatccaaccaaagttgctaggacaaccttttgtgtaccatgctctatgatcaacgccgcaaa |
21492106 |
T |
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| Q |
217 |
tatcttctgtat |
228 |
Q |
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|||||||||||| |
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| T |
21492107 |
tatcttctgtat |
21492118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 21558479 - 21558588
Alignment:
| Q |
29 |
tgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaacccatggaactgttcccattccaggcgagaagaatatg |
128 |
Q |
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| T |
21558479 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaatagg |
21558578 |
T |
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| Q |
129 |
atgtagagtg |
138 |
Q |
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| T |
21558579 |
atgtatagtg |
21558588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 33120102 - 33119985
Alignment:
| Q |
18 |
acccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaacccatggaactgttcccattccaggcg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||||| | |||||||||||| ||||||||||| || | |
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| T |
33120102 |
acccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagagttgataacccatggaaccgttcccattcctggtg |
33120003 |
T |
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| Q |
118 |
agaagaatatgatgtaga |
135 |
Q |
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| T |
33120002 |
aaaagaatattatgtaga |
33119985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 33116880 - 33116784
Alignment:
| Q |
28 |
ttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaacccatggaactgttcccattccaggcgagaagaa |
124 |
Q |
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||||||| || ||||||||||| | |||||||||||| || || || || |||||||| | ||||||||||| || ||||||||||| || ||||| |
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| T |
33116880 |
ttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaa |
33116784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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