View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19528_high_4 (Length: 454)
Name: NF19528_high_4
Description: NF19528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19528_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Complemental strand, 8036409 - 8035982
Alignment:
| Q |
13 |
aaaatataagtataaatttttt-gaagatattacatgttaatctagaaaagaatattgtaattgttttttcaggggaatattgtaattgattgtttataa |
111 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8036409 |
aaaatataagtataattttttttgaagatattacatgttaatctagaaaagaatattgtaattgttttttcaggggaatattgtaattcattgtttataa |
8036310 |
T |
|
| Q |
112 |
ggttaattttaccattttaatatgatatgtatttcatgatgttattatgaggtatgtataaaaatagaaaataaaataatgttattccacttgttatcat |
211 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8036309 |
ggttgattttaccattttaatatgatatgtatttcatcatgttattctgaggtatgtataaaaatagaaaataaaataatgttattccacttgttatcat |
8036210 |
T |
|
| Q |
212 |
atgcacattgaacacattataacatacatatatgtttatcttatctctaatattaatttcatcttattcctattgagccctatctaatattttgtttcta |
311 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8036209 |
atgcacattaaacacattataacatacatatatgtttatcttatctctaatattaatttcatcttattcctattgagccctatgtaatattttgtttcta |
8036110 |
T |
|
| Q |
312 |
attctctatcttattcgtaccattaaaaatgggtctgtatgtggtaatccatcagtacttgattagtaaatggttagctaacagctagcatcttttgttc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8036109 |
attctctatcttattcgtaccattaaaaatgggtctgtatgtggtaatccatcagtacttgattagtaaatggttagctaacagctagcatcttttgttc |
8036010 |
T |
|
| Q |
412 |
atactaatttcataaagctcttgtagtc |
439 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
8036009 |
atactaatttcataaagctcttgtagtc |
8035982 |
T |
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