View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19528_high_6 (Length: 403)
Name: NF19528_high_6
Description: NF19528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19528_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 45723196 - 45722831
Alignment:
| Q |
18 |
ttttattatgctaacaaccaatccaatcttaatttgaaatacctgtagtctgtagactaagattcagcaacttttccattgaaaataatgttatttctta |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45723196 |
ttttattatgc-aacaaccaatccaatcttaatttgaaatac---------gtagactaagattcagcaacttttccattgaaaataatgttatttctta |
45723107 |
T |
|
| Q |
118 |
acaaccaagaaaaattaccctactttagcttgtttgcaccaaggtaatatgtggttgcgattgtgtgttatgttggctcacaagcaaacggtgagtcatg |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45723106 |
acaaccaagaaaaatgaccctactttagcttgtttgcaccaaggtaatatgtggttgcgattgtgtgttatgttggctcacaagcaaacggtgagtcatg |
45723007 |
T |
|
| Q |
218 |
gaaaagaaaaggattgaggcagcattgctttatgatgcaacagatagagaaggtaactttttagtaaataaagggaccacttacataggcatgggccggg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45723006 |
gaaaagaaaaggattgaggcagcattgctttatgatgcaacagatagagaaggtaactttttagtaaataaagggaccacttacataggcatgggccggg |
45722907 |
T |
|
| Q |
318 |
gcaacacatgatatttgtggtacggtccaagttcaacaaacaatgagtaaagtgtagattttatgttcaacttcat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45722906 |
gcaacacatgatatttgtggtacggtccaagttcaacaaacaatgagtaaagtgtagattttatgttcaacttcat |
45722831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University