View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19528_low_10 (Length: 368)

Name: NF19528_low_10
Description: NF19528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19528_low_10
NF19528_low_10
[»] chr5 (6 HSPs)
chr5 (201-342)||(17627457-17627601)
chr5 (19-82)||(17627241-17627304)
chr5 (19-82)||(35074171-35074234)
chr5 (36-72)||(24213348-24213384)
chr5 (36-72)||(24228341-24228377)
chr5 (36-80)||(39888288-39888332)
[»] chr6 (2 HSPs)
chr6 (19-72)||(19441198-19441251)
chr6 (27-71)||(29699281-29699325)
[»] chr4 (5 HSPs)
chr4 (22-83)||(18902112-18902173)
chr4 (205-342)||(21697315-21697449)
chr4 (19-80)||(7895157-7895218)
chr4 (19-77)||(27360253-27360312)
chr4 (27-82)||(51700324-51700379)
[»] chr7 (1 HSPs)
chr7 (20-82)||(7578598-7578661)
[»] chr2 (5 HSPs)
chr2 (22-77)||(21294956-21295011)
chr2 (25-82)||(21289653-21289710)
chr2 (19-82)||(45276411-45276474)
chr2 (19-72)||(25232058-25232111)
chr2 (36-72)||(25225770-25225806)
[»] chr8 (2 HSPs)
chr8 (19-71)||(44711354-44711407)
chr8 (21-72)||(29185595-29185646)
[»] chr1 (5 HSPs)
chr1 (19-72)||(18640558-18640611)
chr1 (19-66)||(18643264-18643311)
chr1 (36-82)||(11444080-11444126)
chr1 (19-72)||(29530160-29530213)
chr1 (19-72)||(29547815-29547868)
[»] chr3 (4 HSPs)
chr3 (19-79)||(21587185-21587245)
chr3 (38-80)||(13100788-13100830)
chr3 (26-72)||(20458820-20458866)
chr3 (22-72)||(44126788-44126838)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 201 - 342
Target Start/End: Original strand, 17627457 - 17627601
Alignment:
Q  201 aatattgattcttacttgttct---tgatattatttgttgtgttgtatacatgtttgtaatataatttattgattctaaactttaatttcatgaaaataa 297  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |    
T  17627457 aatattgattcttacttgttcttcttgatattatttgttgtgttgtatacatgtttgtgatataatttattgattctaaactttaaatacatgaaaatga 17627556  T
Q  298 attcatatctttaattgaaaatatacaacctttaattttcatcat 342  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||    
T  17627557 attcaaatctttaattgaaaatatacaacctttaactttcatcat 17627601  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 17627241 - 17627304
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcatttgtatcctataaatatgactcatat 82  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||    
T  17627241 tagtggtccttaaatattttgatcatttatttgctcatttgtgtccaataaatatgacttatat 17627304  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 35074234 - 35074171
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcatttgtatcctataaatatgactcatat 82  Q
    ||||||||||||| |  |||||||||| ||||||||||||||||||| |||||  |||||||||    
T  35074234 tagtggtccttaattgctttgatcattaatttgctcatttgtatcctgtaaatgagactcatat 35074171  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 24213384 - 24213348
Alignment:
Q  36 tttgatcattcatttgctcatttgtatcctataaata 72  Q
    |||||||||||| |||||||||||| |||||||||||    
T  24213384 tttgatcattcacttgctcatttgtgtcctataaata 24213348  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 24228377 - 24228341
Alignment:
Q  36 tttgatcattcatttgctcatttgtatcctataaata 72  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  24228377 tttgatcattcacttgctcaattgtatcctataaata 24228341  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 39888332 - 39888288
Alignment:
Q  36 tttgatcattcatttgctcatttgtatcctataaatatgactcat 80  Q
    |||| ||||||| ||| |||||||| |||||||||||||||||||    
T  39888332 tttgttcattcacttgatcatttgtgtcctataaatatgactcat 39888288  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 19441251 - 19441198
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcatttgtatcctataaata 72  Q
    |||||||||||||||  |||||||||||| |||||||||||| |||||||||||    
T  19441251 tagtggtccttaaatggtttgatcattcacttgctcatttgtgtcctataaata 19441198  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 29699281 - 29699325
Alignment:
Q  27 cttaaatattttgatcattcatttgctcatttgtatcctataaat 71  Q
    ||||| ||||||||||||||| ||||| |||||||| ||||||||    
T  29699281 cttaattattttgatcattcacttgcttatttgtattctataaat 29699325  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 18902173 - 18902112
Alignment:
Q  22 tggtccttaaatattttgatcattcatttgctcatttgtatcctataaatatgactcatatg 83  Q
    |||||||||| | |||||||| |||| |||||||||||| |||||||||| |||||||||||    
T  18902173 tggtccttaattgttttgatctttcacttgctcatttgtgtcctataaatctgactcatatg 18902112  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 342
Target Start/End: Complemental strand, 21697449 - 21697315
Alignment:
Q  205 ttgattcttacttgttcttgatattatttgttgtgttgtatacatgtttgtaatataatttattgattctaaactttaatttcatgaaaataaattcata 304  Q
    |||||||||||||||||  ||||||| ||||   |||||||||   ||||||  |||||||||||| |||| |||||| || ||||| ||| || |  ||    
T  21697449 ttgattcttacttgttcacgatattacttgt---gttgtatactcatttgtatcataatttattgactctagactttacttccatgacaatgaacttcta 21697353  T
Q  305 tctttaattgaaaatatacaacctttaattttcatcat 342  Q
    |||| |||||||||| ||| |||||| | |||||||||    
T  21697352 tcttaaattgaaaatttaccacctttgagtttcatcat 21697315  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 7895157 - 7895218
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcatttgtatcctataaatatgactcat 80  Q
    ||||||||||||| |||||||| |||| ||||||| |||||| | ||||||||| |||||||    
T  7895157 tagtggtccttaattattttgaacatttatttgcttatttgtgttctataaataagactcat 7895218  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 27360253 - 27360312
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcat-ttgtatcctataaatatgact 77  Q
    ||||||||||||| || |||||||||||| ||| |||| |||||||||||||||| ||||    
T  27360253 tagtggtccttaattactttgatcattcacttgttcatattgtatcctataaataggact 27360312  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 51700379 - 51700324
Alignment:
Q  27 cttaaatattttgatcattcatttgctcatttgtatcctataaatatgactcatat 82  Q
    ||||| |||||||||||||||  |||||||||||||| |||||| | |||||||||    
T  51700379 cttaattattttgatcattcacatgctcatttgtatcatataaagaggactcatat 51700324  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 7578598 - 7578661
Alignment:
Q  20 agtggtccttaaatattttgatcattcatttgctcat-ttgtatcctataaatatgactcatat 82  Q
    |||||||||||| || |||||||||||| ||||| || |||||||||||||||| |||||||||    
T  7578598 agtggtccttaattactttgatcattcacttgcttatattgtatcctataaataggactcatat 7578661  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 21295011 - 21294956
Alignment:
Q  22 tggtccttaaatattttgatcattcatttgctcatttgtatcctataaatatgact 77  Q
    ||||||||||  | |||||||||||| |||||||||||||||||||||||| ||||    
T  21295011 tggtccttaatgactttgatcattcacttgctcatttgtatcctataaataggact 21294956  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 21289710 - 21289653
Alignment:
Q  25 tccttaaatattttgatcattcatttgctcatttgtatcctataaatatgactcatat 82  Q
    ||||||| || |||||||||||| |||||||||||| ||||||||||| |||| ||||    
T  21289710 tccttaattactttgatcattcacttgctcatttgtgtcctataaataggacttatat 21289653  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 45276411 - 45276474
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcatttgtatcctataaatatgactcatat 82  Q
    |||||||||||||   |||||| |||||| || ||||||||| ||||||||||| |||||||||    
T  45276411 tagtggtccttaatagttttgaccattcacttactcatttgtgtcctataaataggactcatat 45276474  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 25232058 - 25232111
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcatttgtatcctataaata 72  Q
    ||||||||||||| |  |||||||||||| |||||||||||| ||| |||||||    
T  25232058 tagtggtccttaattggtttgatcattcacttgctcatttgtgtcccataaata 25232111  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 25225770 - 25225806
Alignment:
Q  36 tttgatcattcatttgctcatttgtatcctataaata 72  Q
    |||||||||||||||| |||||||| |||||||||||    
T  25225770 tttgatcattcatttgttcatttgtgtcctataaata 25225806  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 44711407 - 44711354
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcat-ttgtatcctataaat 71  Q
    |||||||| |||| ||||||||||||||||||| |||| |||||||||||||||    
T  44711407 tagtggtctttaattattttgatcattcatttgttcatattgtatcctataaat 44711354  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 29185646 - 29185595
Alignment:
Q  21 gtggtccttaaatattttgatcattcatttgctcatttgtatcctataaata 72  Q
    ||||||||||| |  ||||||||| ||||||||||||||| |||||||||||    
T  29185646 gtggtccttaattcgtttgatcatccatttgctcatttgtgtcctataaata 29185595  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 18640611 - 18640558
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcatttgtatcctataaata 72  Q
    ||||||||||||| |  |||||||||||| |||||||||||| |||||||||||    
T  18640611 tagtggtccttaattgctttgatcattcacttgctcatttgtgtcctataaata 18640558  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 18643311 - 18643264
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcatttgtatccta 66  Q
    ||||||||||||| |  ||||||||||||||||||||||||| |||||    
T  18643311 tagtggtccttaattgctttgatcattcatttgctcatttgtgtccta 18643264  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 11444126 - 11444080
Alignment:
Q  36 tttgatcattcatttgctcatttgtatcctataaatatgactcatat 82  Q
    |||||||||||| |||||||||||| ||||||||||| |||| ||||    
T  11444126 tttgatcattcacttgctcatttgtgtcctataaataggacttatat 11444080  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 29530160 - 29530213
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcatttgtatcctataaata 72  Q
    ||||||||||||| |  |||||||||||| |||||||||||| || ||||||||    
T  29530160 tagtggtccttaattggtttgatcattcacttgctcatttgtgtcatataaata 29530213  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 29547815 - 29547868
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcatttgtatcctataaata 72  Q
    ||||||||||||| |  |||||||||||| |||||||||| | |||||||||||    
T  29547815 tagtggtccttaatttgtttgatcattcacttgctcatttatgtcctataaata 29547868  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 21587245 - 21587185
Alignment:
Q  19 tagtggtccttaaatattttgatcattcatttgctcatttgtatcctataaatatgactca 79  Q
    ||||| ||||||| |  |||||||||||| |||||||||||| ||||||||||| ||||||    
T  21587245 tagtgatccttaactgctttgatcattcacttgctcatttgtgtcctataaataggactca 21587185  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 13100788 - 13100830
Alignment:
Q  38 tgatcattcatttgctcatttgtatcctataaatatgactcat 80  Q
    |||||||||| ||||| |||||||||||||||||| |||||||    
T  13100788 tgatcattcacttgcttatttgtatcctataaataggactcat 13100830  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 20458866 - 20458820
Alignment:
Q  26 ccttaaatattttgatcattcatttgctcatttgtatcctataaata 72  Q
    |||||||| ||||||||||||| ||||||||||||  ||||||||||    
T  20458866 ccttaaatgttttgatcattcacttgctcatttgtgacctataaata 20458820  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 44126838 - 44126788
Alignment:
Q  22 tggtccttaaatattttgatcattcatttgctcatttgtatcctataaata 72  Q
    ||||||||||  | |||||||||||| |||||||||||| |||||||||||    
T  44126838 tggtccttaatgactttgatcattcacttgctcatttgtgtcctataaata 44126788  T

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