View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19528_low_14 (Length: 262)
Name: NF19528_low_14
Description: NF19528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19528_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 5939847 - 5940083
Alignment:
| Q |
13 |
aatatgttgaagggtcaatttcatctgcaacaaaattgttgaatttgagatgtaaaagaagttaaaaaccatgaa-ttcatgtgaattaaaatggnnnnn |
111 |
Q |
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| T |
5939847 |
aatatgttgaagggtcaatttcatctgcaaaaaaattgttgaatttgagatgtaaaagaagttaaaaaccatgaaattcatgtgaattaaaatggaaaaa |
5939946 |
T |
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| Q |
112 |
nngtaatgtacctttaaaagggtatccaggagaagaagcagtactagaaatggttatatttgatctttgagaccttgtatcttctctaaagcttctcata |
211 |
Q |
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| T |
5939947 |
aagtaatgtacctttaaaagggtatccaggagaagaagcagtactagaaatggttatatttgatctttgagaccttgtatcttctctaaagcttctcata |
5940046 |
T |
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| Q |
212 |
taagaacctgaataccttctagaattgttgttactct |
248 |
Q |
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| T |
5940047 |
taagaacctgaataccttctagaattgttgttactct |
5940083 |
T |
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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 6893533 - 6893448
Alignment:
| Q |
115 |
taatgtacctttaaaagggtatccaggagaagaagcagtactagaaatggttatatttgatctttgagaccttgtatcttctctaa |
200 |
Q |
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| T |
6893533 |
taatgtaccttttaatgtatatccaggagaagaagcagtgctagaaatggttatatttgatctaaaagactttgaatcttctctaa |
6893448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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