View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19528_low_19 (Length: 237)
Name: NF19528_low_19
Description: NF19528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19528_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4982115 - 4982331
Alignment:
| Q |
1 |
aattggtggatccaaacgtggcctacaatccacactaaaaataaaaggtactttggtggattttggttggtcaactttgatcgcacatgccaacaaataa |
100 |
Q |
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| T |
4982115 |
aattggtggatccaaacgtggcctacaatccacactaaaaataaaaggtaccttgttggattttggttggtcaacttttatcgtacatgccaacaaataa |
4982214 |
T |
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| Q |
101 |
gcacaggtaactgaaaaagttgaaagcttaataaccttgttannnnnnncaatcttggattgtgcatgtttcttaagcttttgaatatccaaaggtgaca |
200 |
Q |
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| T |
4982215 |
gcacaagtaactgaaaaagttgaaagcttaataaccttgttatttttttcaatcttggattgtgcatgtttcttaagcttttgaatatccaaaggtgaca |
4982314 |
T |
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| Q |
201 |
attgaaaaatacctttg |
217 |
Q |
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||||||||||||||||| |
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| T |
4982315 |
attgaaaaatacctttg |
4982331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 4978010 - 4978134
Alignment:
| Q |
1 |
aattggtggatccaaacgtggcctacaatccacactaaaaataaaaggtactttggtggattttggttggtcaactttgatcgcacatgccaacaaataa |
100 |
Q |
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|||||||||||||||||||| ||||| ||| | | |||||| ||||| | || | |||||||||| ||||||||| | ||| |||||||||||||| |
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| T |
4978010 |
aattggtggatccaaacgtgacctactatcgatagtaaaaacaaaagctgtcttattagattttggtttgtcaactttaaccgctaatgccaacaaataa |
4978109 |
T |
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| Q |
101 |
gcacaggtaactgaaaaagttgaaa |
125 |
Q |
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| T |
4978110 |
gcacaagtaaccgcaaaagttgaaa |
4978134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 4994914 - 4994975
Alignment:
| Q |
158 |
gattgtgcatgtttcttaagcttttgaatatccaaaggtgacaattgaaaaatacctttgat |
219 |
Q |
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| T |
4994914 |
gattgtgcatatttcttaagcttttgaatatccaaaagtgataattcaaacaaacctttgat |
4994975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 4978152 - 4978216
Alignment:
| Q |
155 |
ttggattgtgcatgtttcttaagcttttgaatatccaaaggtgacaattgaaaaatacctttgat |
219 |
Q |
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| T |
4978152 |
ttggattgtgcatatttcttaagcttttgaatatctaaaagtgaaaattcaaacaaacctttgat |
4978216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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