View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19528_low_2 (Length: 558)

Name: NF19528_low_2
Description: NF19528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19528_low_2
NF19528_low_2
[»] chr8 (10 HSPs)
chr8 (19-556)||(44633161-44633694)
chr8 (19-122)||(39269559-39269662)
chr8 (19-114)||(39568333-39568428)
chr8 (37-122)||(45378369-45378451)
chr8 (160-227)||(39270419-39270486)
chr8 (160-227)||(39567461-39567528)
chr8 (160-227)||(45377513-45377580)
chr8 (180-217)||(45378302-45378339)
chr8 (180-217)||(39568269-39568306)
chr8 (185-217)||(39269687-39269719)
[»] chr6 (7 HSPs)
chr6 (20-556)||(5659588-5660110)
chr6 (156-556)||(21612132-21612531)
chr6 (19-122)||(21282955-21283058)
chr6 (156-248)||(21612570-21612663)
chr6 (160-227)||(21283557-21283624)
chr6 (87-122)||(21612691-21612726)
chr6 (19-56)||(21612771-21612808)
[»] scaffold0031 (5 HSPs)
scaffold0031 (20-122)||(123563-123665)
scaffold0031 (20-122)||(134439-134541)
scaffold0031 (160-227)||(128992-129059)
scaffold0031 (185-217)||(123694-123726)
scaffold0031 (185-217)||(134565-134597)
[»] chr4 (16 HSPs)
chr4 (20-122)||(702467-702569)
chr4 (20-122)||(770766-770868)
chr4 (20-120)||(756626-756726)
chr4 (21-114)||(35060278-35060371)
chr4 (19-114)||(16039503-16039598)
chr4 (160-227)||(702033-702100)
chr4 (160-227)||(757085-757152)
chr4 (160-227)||(770332-770399)
chr4 (160-227)||(35055737-35055804)
chr4 (160-227)||(16038664-16038731)
chr4 (180-217)||(16039437-16039474)
chr4 (180-217)||(35060215-35060252)
chr4 (87-122)||(33075036-33075071)
chr4 (185-217)||(702411-702443)
chr4 (185-217)||(756759-756791)
chr4 (185-217)||(770710-770742)
[»] chr1 (5 HSPs)
chr1 (19-122)||(51599250-51599353)
chr1 (160-227)||(51598362-51598429)
chr1 (160-227)||(16962999-16963066)
chr1 (20-74)||(16962149-16962203)
chr1 (185-217)||(51599192-51599224)
[»] chr3 (8 HSPs)
chr3 (19-111)||(21816047-21816139)
chr3 (166-210)||(36982928-36982972)
chr3 (166-210)||(37008367-37008411)
chr3 (87-122)||(36982856-36982891)
chr3 (87-122)||(37008295-37008330)
chr3 (156-194)||(21816177-21816215)
chr3 (36-77)||(36982826-36982867)
chr3 (36-77)||(37008265-37008306)
[»] chr7 (7 HSPs)
chr7 (19-108)||(21709297-21709386)
chr7 (20-77)||(26025728-26025785)
chr7 (160-227)||(26025287-26025354)
chr7 (160-227)||(21710193-21710259)
chr7 (87-122)||(26025704-26025739)
chr7 (185-217)||(21709415-21709447)
chr7 (185-217)||(26025648-26025680)
[»] chr5 (1 HSPs)
chr5 (78-111)||(24648582-24648615)


Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 19 - 556
Target Start/End: Complemental strand, 44633694 - 44633161
Alignment:
Q  19 cgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44633694 cgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcgccttcatcttcttcaacaaatcttcataaaacct 44633595  T
Q  119 tcatccaccttcatacgaatccagaagaagnnnnnnncttaaacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacc 218  Q
    |||||||||||||||| || ||||||||||       |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  44633594 tcatccaccttcatacaaacccagaagaagaaaaaaacttaaacaacaaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaacc 44633495  T
Q  219 cattatcattttatttgtgaatttctttaagatttggaatgactaannnnnnnnattttattacattgacaacagcttcacccataacaccataagtagt 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||         |||||||||| ||||||||||||||||||||||||||||||||||    
T  44633494 cattatcattttatttctgaatttctttaagatttggaatgactaattttt----ttttattacaatgacaacagcttcacccataacaccataagtagt 44633399  T
Q  319 cttcttcttcttccataggtcttcccgtaacaccataacaccatcaaatgaaaatttgttttcagttcctcttgaacaaatgaaaatcggaaatcatgct 418  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44633398 cttcttcttcttccataggtcttctcgtaacaccataacaccatcaaatgaaaattcgttttcagttcctcttgaacaaatgaaaatcggaaatcatgct 44633299  T
Q  419 caaaatcgttgatttgcgttgttgaaactgcaaatcgcaaatcatcttcgagtttttcgtgttcttgttcttattcatgtgttcctcttttgattgggtg 518  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44633298 caaaatcgttgatttgcgttgttgaaactgcaaattgcaaatcatcttcaagtttttcgtgttcttgttcttattcatgtgttcctcttttgattgggtg 44633199  T
Q  519 ctgaaacgtgttccaattctccttcatctgtgctcctc 556  Q
    |||||||||||||||||||||||||||||||| |||||    
T  44633198 ctgaaacgtgttccaattctccttcatctgtgttcctc 44633161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 39269559 - 39269662
Alignment:
Q  19 cgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacct 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39269559 cgttaacttaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacct 39269658  T
Q  119 tcat 122  Q
    ||||    
T  39269659 tcat 39269662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 39568428 - 39568333
Alignment:
Q  19 cgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaa 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39568428 cgttaactcaagcacacgtgtcattttcgcattggttgaaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaa 39568333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 45378451 - 45378369
Alignment:
Q  37 tgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 122  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||    
T  45378451 tgtcattttcgcaatggttggaatttatattcatcttcctcctcctcaccttcat---cttcaacaaatcttcataaaaccttcat 45378369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 39270419 - 39270486
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| |||||||    
T  39270419 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatctaaatctaaaccctttatcat 39270486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 39567528 - 39567461
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  39567528 aacaacaaaactcatcagataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 39567461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 45377580 - 45377513
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |||||||    
T  45377580 aacaacaaaactcatcaaataaaactttacatttatcatttgaaatccaaatctaaaccctttatcat 45377513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 45378339 - 45378302
Alignment:
Q  180 aaaactttacctttatcttatgaaatccaaatctaaac 217  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  45378339 aaaactttacctttatcatatgaaatccaaatctaaac 45378302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 39568306 - 39568269
Alignment:
Q  180 aaaactttacctttatcttatgaaatccaaatctaaac 217  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  39568306 aaaactttacctttatcatttgaaatccaaatctaaac 39568269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 39269687 - 39269719
Alignment:
Q  185 tttacctttatcttatgaaatccaaatctaaac 217  Q
    |||||||||||| ||||||||||||||||||||    
T  39269687 tttacctttatcatatgaaatccaaatctaaac 39269719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 556
Target Start/End: Complemental strand, 5660110 - 5659588
Alignment:
Q  20 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacctt 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5660110 gttaactcaagcacacgtgtcattttcacattggttggaatttatattcatcttcttcctcctcatcttcatcttcttcaacaaatcttcataaaacctt 5660011  T
Q  120 catccaccttcatacgaatccagaagaagnnnnnnncttaaacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaaccc 219  Q
    ||| ||    || |  ||   | || ||        ||||||||||||||||||||| |||| |||||||||||||| |||||||||| ||||||||| |    
T  5660010 catacaaacccagagaaa--aaaaaaaaaaaaaaaacttaaacaacaaaactcatcatataatactttacctttatcatatgaaatcctaatctaaactc 5659913  T
Q  220 attatcatttt-atttgtgaatttctttaagatttggaatgactaannnnnnnnattttattacattgacaacagcttcacccataacaccataagtagt 318  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||         ||||||| || |||||||| |||||||||||||||||||||| ||    
T  5659912 attatcattttaatttgtgaatttctttaagatttggaatgactaaatttt----ttttattccaatgacaacaacttcacccataacaccataagtcgt 5659817  T
Q  319 cttcttcttcttccataggtcttcccgtaacaccataacaccatcaaatgaaaatttgttttcagttcctcttgaacaaatgaaaatcggaaatcatgct 418  Q
    | ||||||||||||||||||||||         ||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  5659816 cgtcttcttcttccataggtcttc--------tcataacaccatcaaacgaaaattcgttttcaattcctcttaaacaaatgaaaatcggaaatcatgct 5659725  T
Q  419 caaaatcgttgatt----tgcgttgttgaaactgcaaatcgcaaatcatcttcgagtttttcgtgttcttgttcttattcatgtgttcctcttttgatt- 513  Q
    ||||||||||||||    ||||||||||       |||| |||||| |||||| ||||||| ||||||| ||||||| |||||||||||||||||||||     
T  5659724 caaaatcgttgatttgcatgcgttgttg-------aaattgcaaataatcttcaagttttttgtgttctagttcttactcatgtgttcctcttttgattg 5659632  T
Q  514 gggtgctgaaa-cgtgttccaattctccttcatctgtgctcctc 556  Q
    |||| |||||| ||||||||||||||||||||| |||| |||||    
T  5659631 gggtactgaaatcgtgttccaattctccttcatatgtgttcctc 5659588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 156 - 556
Target Start/End: Complemental strand, 21612531 - 21612132
Alignment:
Q  156 cttaaacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcatttta-tttgtgaatttctttaagatttg 254  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||||||| |||| |||||||||||| ||||||||||    
T  21612531 cttaaacaacaaaacttatcaaataaaattttacctttatcatatgaaatccaaatcaaaactcattatcactttaatttgtgaatttccttaagatttg 21612432  T
Q  255 gaatgactaannnnnnnnattttattacattgacaacagcttcacccataacaccataagtagtcttcttcttcttc---------cataggtcttcccg 345  Q
    ||||||||||         ||| ||| || |||||||||||||||||||||||||||||||  ||||||||||||||         ||||||||||| |     
T  21612431 gaatgactaaatttt----tttcattccaatgacaacagcttcacccataacaccataagtcttcttcttcttcttcttcttcttccataggtcttctc- 21612337  T
Q  346 taacaccataacaccatcaaatgaaaatttgttttcagttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcgttgttgaaa 445  Q
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  21612336 -------ataacaccatcaaatgaaaattcgttttcagttcctcttgaacaaatgaaaatcggaaatcatgcttaaaatctttgatttgcgttgttgaaa 21612244  T
Q  446 ctgcaaatcgcaaatcatcttcgagtttttcgtgttcttgttcttattcatgtgttcctcttttgattgggtgctgaaa-cgtgttccaattctccttca 544  Q
    |||||||||| ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  21612243 ctgcaaatcggaaatcatcttcaagtttttcatgttctagttcttattcatgtgttcctcttttgattgggtacttaaatcgtgttccaattctccttca 21612144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 21282955 - 21283058
Alignment:
Q  19 cgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacct 118  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21282955 cgttaactcaagcacatgtgtcattttcgcattagttggaatttatcttcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacct 21283054  T
Q  119 tcat 122  Q
    ||||    
T  21283055 tcat 21283058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 21612663 - 21612570
Alignment:
Q  156 cttaaacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcatttt-atttgtgaatttctttaa 248  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||| ||||||||||||| ||||    
T  21612663 cttaaacaacaaaactcatcaaataaaattttacctttatcatatgaaatccaaatcaaaactcattatcattttaatttgtgaatttccttaa 21612570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 21283557 - 21283624
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||  |||||||    
T  21283557 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccatttatcat 21283624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 21612726 - 21612691
Alignment:
Q  87 ttcatcttcttcaacaaatcttcataaaaccttcat 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  21612726 ttcatcttcttcaacaaatcttcataaaaccttcat 21612691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 21612808 - 21612771
Alignment:
Q  19 cgttaactcaagcacacgtgtcattttcgcattggttg 56  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  21612808 cgttaactcaagcacacatgtcattttcgcattggttg 21612771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 103; Significance: 5e-51; HSPs: 5)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 123563 - 123665
Alignment:
Q  20 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacctt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  123563 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacctt 123662  T
Q  120 cat 122  Q
    |||    
T  123663 cat 123665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 134439 - 134541
Alignment:
Q  20 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacctt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134439 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacctt 134538  T
Q  120 cat 122  Q
    |||    
T  134539 cat 134541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 128992 - 129059
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  128992 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 129059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 123694 - 123726
Alignment:
Q  185 tttacctttatcttatgaaatccaaatctaaac 217  Q
    |||||||||||| ||||||||||||||||||||    
T  123694 tttacctttatcatatgaaatccaaatctaaac 123726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 134565 - 134597
Alignment:
Q  185 tttacctttatcttatgaaatccaaatctaaac 217  Q
    |||||||||||| ||||||||||||||||||||    
T  134565 tttacctttatcatatgaaatccaaatctaaac 134597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 702569 - 702467
Alignment:
Q  20 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacctt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702569 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacctt 702470  T
Q  120 cat 122  Q
    |||    
T  702469 cat 702467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 770868 - 770766
Alignment:
Q  20 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacctt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  770868 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacctt 770769  T
Q  120 cat 122  Q
    |||    
T  770768 cat 770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 756626 - 756726
Alignment:
Q  20 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacctt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  756626 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacctt 756725  T
Q  120 c 120  Q
    |    
T  756726 c 756726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 35060371 - 35060278
Alignment:
Q  21 ttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaa 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35060371 ttaactcaagcacacgtgtcatttttgcattggttggaatttatattcatcttcttcctcctcaccttcaccttcttcaacaaatcttcataaa 35060278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 16039598 - 16039503
Alignment:
Q  19 cgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaa 114  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16039598 cgttaactcaaacacacatgtcattttcgcattggttagaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaa 16039503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 702100 - 702033
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  702100 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 702033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 757085 - 757152
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  757085 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 757152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 770399 - 770332
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  770399 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 770332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 35055804 - 35055737
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    ||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||| |||||||    
T  35055804 aacaacaaaactcatcagataaaattttacatttatcatatgaaatccaaatctaaaccctttatcat 35055737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 16038731 - 16038664
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    ||||||||||||||||| |||||||||||| ||| |  |||||||||||||||||||||| |||||||    
T  16038731 aacaacaaaactcatcagataaaactttacatttcttatatgaaatccaaatctaaaccctttatcat 16038664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 16039474 - 16039437
Alignment:
Q  180 aaaactttacctttatcttatgaaatccaaatctaaac 217  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  16039474 aaaactttacctttatcatatgaaatccaaatctaaac 16039437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 35060252 - 35060215
Alignment:
Q  180 aaaactttacctttatcttatgaaatccaaatctaaac 217  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  35060252 aaaactttacctttatcatatgaaatccaaatctaaac 35060215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 33075071 - 33075036
Alignment:
Q  87 ttcatcttcttcaacaaatcttcataaaaccttcat 122  Q
    ||||||||||||| ||||||||||||||||||||||    
T  33075071 ttcatcttcttcatcaaatcttcataaaaccttcat 33075036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 702443 - 702411
Alignment:
Q  185 tttacctttatcttatgaaatccaaatctaaac 217  Q
    |||||||||||| ||||||||||||||||||||    
T  702443 tttacctttatcatatgaaatccaaatctaaac 702411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 756759 - 756791
Alignment:
Q  185 tttacctttatcttatgaaatccaaatctaaac 217  Q
    |||||||||||| ||||||||||||||||||||    
T  756759 tttacctttatcatatgaaatccaaatctaaac 756791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 770742 - 770710
Alignment:
Q  185 tttacctttatcttatgaaatccaaatctaaac 217  Q
    |||||||||||| ||||||||||||||||||||    
T  770742 tttacctttatcatatgaaatccaaatctaaac 770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 51599353 - 51599250
Alignment:
Q  19 cgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaacct 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  51599353 cgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttccaactcaccttcatcttcttcaacaaatcttcataaaacct 51599254  T
Q  119 tcat 122  Q
    ||||    
T  51599253 tcat 51599250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 51598429 - 51598362
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  51598429 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 51598362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 16962999 - 16963066
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  16962999 aacaacaaaactcatcagataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 16963066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 16962149 - 16962203
Alignment:
Q  20 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttc 74  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16962149 gttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttc 16962203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 51599224 - 51599192
Alignment:
Q  185 tttacctttatcttatgaaatccaaatctaaac 217  Q
    |||||||||||| ||||||||||||||||||||    
T  51599224 tttacctttatcatatgaaatccaaatctaaac 51599192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 21816047 - 21816139
Alignment:
Q  19 cgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcat 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21816047 cgttaactcaagcacacgtgtcatttttgcattggttggaatttatattcatcttcttcctcctcgccttcatcttcttcaacaaatcttcat 21816139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 36982928 - 36982972
Alignment:
Q  166 aaaactcatcaaataaaactttacctttatcttatgaaatccaaa 210  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||    
T  36982928 aaaactcatcaaataaaattttacctttatcatatgaaattcaaa 36982972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 37008367 - 37008411
Alignment:
Q  166 aaaactcatcaaataaaactttacctttatcttatgaaatccaaa 210  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||    
T  37008367 aaaactcatcaaataaaattttacctttatcatatgaaattcaaa 37008411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 36982856 - 36982891
Alignment:
Q  87 ttcatcttcttcaacaaatcttcataaaaccttcat 122  Q
    ||||||||||||| ||||||||||||||||||||||    
T  36982856 ttcatcttcttcatcaaatcttcataaaaccttcat 36982891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 37008295 - 37008330
Alignment:
Q  87 ttcatcttcttcaacaaatcttcataaaaccttcat 122  Q
    ||||||||||||| ||||||||||||||||||||||    
T  37008295 ttcatcttcttcatcaaatcttcataaaaccttcat 37008330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 21816177 - 21816215
Alignment:
Q  156 cttaaacaacaaaactcatcaaataaaactttaccttta 194  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  21816177 cttaaacaacaaaattcatcaaaaaaaactttaccttta 21816215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 36982826 - 36982867
Alignment:
Q  36 gtgtcattttcgcattggttggaatttatattcatcttcttc 77  Q
    ||||||| |||||||||| |||||| ||||||||||||||||    
T  36982826 gtgtcatcttcgcattggctggaatatatattcatcttcttc 36982867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 37008265 - 37008306
Alignment:
Q  36 gtgtcattttcgcattggttggaatttatattcatcttcttc 77  Q
    ||||||| |||||||||| |||||| ||||||||||||||||    
T  37008265 gtgtcatcttcgcattggctggaatatatattcatcttcttc 37008306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 21709297 - 21709386
Alignment:
Q  19 cgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatctt 108  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  21709297 cgttaactcaagcacacgtgtcatttttgcattggttagaatttatattcatcttcttccaactcaccttcatctttttcaacaaatctt 21709386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 26025785 - 26025728
Alignment:
Q  20 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26025785 gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 26025728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 26025354 - 26025287
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  26025354 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 26025287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 21710193 - 21710259
Alignment:
Q  160 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 227  Q
    ||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||    
T  21710193 aacaacaaaacacatcaaa-aaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 21710259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 26025739 - 26025704
Alignment:
Q  87 ttcatcttcttcaacaaatcttcataaaaccttcat 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  26025739 ttcatcttcttcaacaaatcttcataaaaccttcat 26025704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 21709415 - 21709447
Alignment:
Q  185 tttacctttatcttatgaaatccaaatctaaac 217  Q
    |||||||||||| ||||||||||||||||||||    
T  21709415 tttacctttatcatatgaaatccaaatctaaac 21709447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 26025680 - 26025648
Alignment:
Q  185 tttacctttatcttatgaaatccaaatctaaac 217  Q
    |||||||||||| ||||||||||||||||||||    
T  26025680 tttacctttatcatatgaaatccaaatctaaac 26025648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 24648615 - 24648582
Alignment:
Q  78 ctcctcaccttcatcttcttcaacaaatcttcat 111  Q
    ||||||||||||||| ||||||||||||||||||    
T  24648615 ctcctcaccttcatcatcttcaacaaatcttcat 24648582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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