View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19528_low_5 (Length: 428)
Name: NF19528_low_5
Description: NF19528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19528_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 410
Target Start/End: Original strand, 8361552 - 8361937
Alignment:
| Q |
13 |
gagagggcaacgagatcttgcaaggaaagtcctctttgagagaagctttgttgtaattgggagatgttgaaagtgggagctggcaattgtctcgtttcag |
112 |
Q |
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| T |
8361552 |
gagagggcaacgagatcttgcaaggaaagtcctctttgagagaagctttgttgtaattgggagatgttgaaagtgggagctggcaattgtctcgtttcag |
8361651 |
T |
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| Q |
113 |
tagcctttgagattataccatcctttcttccttttggtacttcccaatttggccctccggactaattaatgacatatatgacactcaaaaaatgta---t |
209 |
Q |
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| T |
8361652 |
tagcctttgagattataccatcctttcttccttttggtacttcccaatttggccctccggac----taatgac----atgacactcaaaaaatgtattgt |
8361743 |
T |
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| Q |
210 |
taattgttactgcaacgtaacctttaaattatcataaaattcatatcatcatttgtgattgtgacttaccagagtgacagcgtccctagcagcaagagcc |
309 |
Q |
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| T |
8361744 |
tatttgttactgc-----aacctttaaattat--tataattcatatcatcatttgtgattgtgacttaccagagtgacagcgtctctagcagcaagagcc |
8361836 |
T |
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| Q |
310 |
aagatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtc |
409 |
Q |
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| T |
8361837 |
aaaatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtc |
8361936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 392
Target Start/End: Complemental strand, 31748206 - 31748100
Alignment:
| Q |
286 |
acagcgtccctagcagcaagagccaagatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaattacataaaatg |
385 |
Q |
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| T |
31748206 |
acagcatcccttgctgcaaaagctaagatatcagcacaagagactacaccagggcaagcagcttctaatgctttctttgcattatcaatgataaagaatg |
31748107 |
T |
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| Q |
386 |
catgcaa |
392 |
Q |
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| T |
31748106 |
catgcaa |
31748100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 9058591 - 9058655
Alignment:
| Q |
346 |
gcttccaatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtcc |
410 |
Q |
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| T |
9058591 |
gcttctaatgctttctttgcttcatcaatgacatagaatgcatgcaatgaaatgtttggcggtcc |
9058655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 332
Target Start/End: Complemental strand, 37111348 - 37111313
Alignment:
| Q |
297 |
agcagcaagagccaagatatcagcacaagacacgac |
332 |
Q |
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| T |
37111348 |
agcagcaagagccaaaatatcagcacaagacacgac |
37111313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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