View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19528_low_7 (Length: 396)
Name: NF19528_low_7
Description: NF19528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19528_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 32860362 - 32860003
Alignment:
| Q |
17 |
atgagttaggaaaaggagagttcttgtttatgctttgtggtttttatgtgaattattgattcattatgttttaaattatgctttacttgttgggattgta |
116 |
Q |
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| T |
32860362 |
atgatttaggaaaaggagagttcttgtttatgctttgtggtttttatgtgaattattgattcattatgttttaaattatgctttacttgttgggattgca |
32860263 |
T |
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| Q |
117 |
atgttgtgttatcattagcatagatattggtatgcaatagcaatttaaaattattaaccaatgaaatcttgaaattttaagttgcttgttagttcataat |
216 |
Q |
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| T |
32860262 |
atgttgtgttatcattagcatagatattggtatgcaatagcaatttaaaattattaaccaatgaaatcttgaaattttaagttgcttgttagttcataat |
32860163 |
T |
|
| Q |
217 |
gggtttcattgttgttccttttaagttgcttccttcaattcattgaggattttcaagtttgcatttaatagaagtttagctgtgttttgaaatctgtcgg |
316 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32860162 |
gggtttcattgttgttccttttaagttgttttcttcaattcattgaggattttcaagtttgcatttaatagaagtttagctgtgttttgaaatctggcgg |
32860063 |
T |
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| Q |
317 |
aatagaagaacgtcgagtttgttttccgatggtagttgttacatagatttgttagggtta |
376 |
Q |
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| T |
32860062 |
aatagaagaccgtcgagtttgttttccaatggtagttgttacatagatttgttagggtta |
32860003 |
T |
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