View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19528_low_8 (Length: 388)

Name: NF19528_low_8
Description: NF19528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19528_low_8
NF19528_low_8
[»] chr2 (2 HSPs)
chr2 (91-374)||(8021652-8021928)
chr2 (13-85)||(8021974-8022046)
[»] scaffold0257 (1 HSPs)
scaffold0257 (189-374)||(19915-20094)
[»] chr3 (7 HSPs)
chr3 (302-374)||(28163464-28163536)
chr3 (263-374)||(17743718-17743823)
chr3 (263-374)||(19045038-19045143)
chr3 (302-370)||(28060218-28060286)
chr3 (302-370)||(28070643-28070711)
chr3 (263-374)||(28187474-28187579)
chr3 (312-374)||(11422039-11422101)
[»] scaffold0922 (1 HSPs)
scaffold0922 (312-374)||(2553-2615)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 91 - 374
Target Start/End: Complemental strand, 8021928 - 8021652
Alignment:
Q  91 ttcataggttctcttaattagattaattaccgctaaaactttgtatctataacttgtcaattgttttgaacagctaaatgaatttattaatgaggaacgt 190  Q
    |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021928 ttcataggttctcttacttagattaattatcgctaaaactttgtatttataacttgtcaattgttttgaacagctaaatgaatttattaatgaggaacgt 8021829  T
Q  191 atgtccgagcaataaataaaatattgaaggataaagaaaagcagggaacaacttgaatgcaacgnnnnnnnntagtctaataaccaagaggatcacttaa 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        |||||||||||| |||||||||||||||    
T  8021828 atgtccgagcaataaataaaatattgaaggataaagaaaagcagggaacaaattgaatgcaacg-aaaaaaatagtctaataactaagaggatcacttaa 8021730  T
Q  291 aggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatg 374  Q
    ||      ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021729 ag------catcccgtgttcgtaaaatttgtgcctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatg 8021652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 8022046 - 8021974
Alignment:
Q  13 aatattttgtcaaagtggtaaggggtgtaaatcttttaagcatgtggtaataggtttgaactctgccaccttc 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8022046 aatattttgtcaaagtggtaaggggtgtaaatcttttaagcatgtggtaataggtttgaactctgccaccttc 8021974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 189 - 374
Target Start/End: Complemental strand, 20094 - 19915
Alignment:
Q  189 gtatgtccgagcaataaataaaatattgaaggataaagaaaagcagggaacaacttgaatgcaacgnnnnnnnntagtctaataaccaagaggatcactt 288  Q
    |||||| |||||||||||||||||||| |||||||||||||| ||||||||  || ||||||||||        |||| |||||||||| ||||||||||    
T  20094 gtatgttcgagcaataaataaaatattcaaggataaagaaaatcagggaactgctagaatgcaacgaaaaaaaatagtttaataaccaataggatcactt 19995  T
Q  289 aaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatg 374  Q
    ||||      || |||| ||| ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  19994 aaag------caccccgagtttgtaaaatttgtgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaattgatg 19915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 28163536 - 28163464
Alignment:
Q  302 cccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatg 374  Q
    |||| ||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  28163536 cccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaattgatg 28163464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 263 - 374
Target Start/End: Original strand, 17743718 - 17743823
Alignment:
Q  263 tagtctaataaccaagaggatcacttaaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagagga 362  Q
    |||||||||| |||| ||||||||||||||      || | || ||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||    
T  17743718 tagtctaatagccaataggatcacttaaag------cagctcgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagagga 17743811  T
Q  363 agccaattgatg 374  Q
    | ||||||||||    
T  17743812 atccaattgatg 17743823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 263 - 374
Target Start/End: Original strand, 19045038 - 19045143
Alignment:
Q  263 tagtctaataaccaagaggatcacttaaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagagga 362  Q
    |||||||||| |||| ||||||||||||||      || | || ||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||    
T  19045038 tagtctaatagccaataggatcacttaaag------cagctcgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagagga 19045131  T
Q  363 agccaattgatg 374  Q
    | ||||||||||    
T  19045132 atccaattgatg 19045143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 28060286 - 28060218
Alignment:
Q  302 cccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaatt 370  Q
    |||| ||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  28060286 cccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaatt 28060218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 28070711 - 28070643
Alignment:
Q  302 cccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaatt 370  Q
    |||| ||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  28070711 cccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaatt 28070643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 263 - 374
Target Start/End: Complemental strand, 28187579 - 28187474
Alignment:
Q  263 tagtctaataaccaagaggatcacttaaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagagga 362  Q
    |||||||||| |||| ||||||||||||||      || |||| ||  ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  28187579 tagtctaatagccaataggatcacttaaag------cagcccgagtatgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcacagga 28187486  T
Q  363 agccaattgatg 374  Q
    ||||||||||||    
T  28187485 agccaattgatg 28187474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 11422101 - 11422039
Alignment:
Q  312 taaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatg 374  Q
    ||||| |||| ||||||| |||||||||||||| ||| ||||||| |||||||||||||||||    
T  11422101 taaaaattgtgcctcctgctgagtgatgctctgtaaaacagcttcggaggaagccaattgatg 11422039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 2615 - 2553
Alignment:
Q  312 taaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatg 374  Q
    |||||| ||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  2615 taaaatctgtgcctcctgttgagtgatgttctgcaaaacagcttcaaaggaagccaattgatg 2553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University