View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19529_high_15 (Length: 507)

Name: NF19529_high_15
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19529_high_15
NF19529_high_15
[»] chr7 (2 HSPs)
chr7 (10-490)||(46708873-46709353)
chr7 (43-372)||(46707941-46708270)
[»] chr1 (2 HSPs)
chr1 (113-488)||(36926240-36926615)
chr1 (292-383)||(47126843-47126934)
[»] chr8 (13 HSPs)
chr8 (262-488)||(6262182-6262408)
chr8 (322-371)||(6273451-6273500)
chr8 (322-371)||(6389882-6389931)
chr8 (323-371)||(6368901-6368949)
chr8 (325-373)||(6423160-6423208)
chr8 (322-373)||(6351240-6351291)
chr8 (320-371)||(6456154-6456205)
chr8 (324-371)||(7457983-7458030)
chr8 (324-371)||(7470385-7470432)
chr8 (320-374)||(6449687-6449741)
chr8 (322-371)||(6362125-6362174)
chr8 (111-167)||(6261939-6261995)
chr8 (320-368)||(6409129-6409177)
[»] chr5 (1 HSPs)
chr5 (310-371)||(9606278-9606339)
[»] chr2 (3 HSPs)
chr2 (328-371)||(42692174-42692217)
chr2 (115-167)||(42689835-42689887)
chr2 (408-452)||(42692254-42692298)


Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 10 - 490
Target Start/End: Original strand, 46708873 - 46709353
Alignment:
Q  10 acatcatcattcatagctacaattctttcttcaatttctttcagtttctttccaaacctgtcaaatgcttccagtggttctgcatcacatgtccaatgca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46708873 acatcatcattcatagctacaattctttcttcaatttctttcagtttctttccaaacctgtcaaatgcttccagtggctctgcatcacatgtccaatgca 46708972  T
Q  110 tactgtctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctataagcgaaattccaacaagagtctgcaattgtcccgtgattgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  46708973 tactgtctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctataagcgaaatgccaacaagagtctgcaattgtgccgtgattgt 46709072  T
Q  210 tttcaaaaaagctttatcaggatttgtcacaagttcatcataatctatagttcctttctcaggcatgaatcggcgacttattgttggacggtttggtgag 309  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46709073 tttcaaaaaagctttatcaggatttgtcacaagttcatcatactctatagttcctttctcaggcatgaatcggcgacttattgttggacggtttggtgag 46709172  T
Q  310 taacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgcatgtttccgtcaactcttccactgttt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46709173 taacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgcatgtttccgtcaactcttccactgttt 46709272  T
Q  410 gcatctttggccaccaaggctcgtttttcttgtcgccgtgaccttcttgtatcaattccttccaccaagattgtagttctg 490  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46709273 gcatctttggccaccaaggctcgtttttcttgtcgccgtgaccttcttgtatcaattccttccaccaagattgtagttctg 46709353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 43 - 372
Target Start/End: Original strand, 46707941 - 46708270
Alignment:
Q  43 atttctttcagtttctttccaaacctgtcaaatgcttccagtggttctgcatcacatgtccaatgcatactgtctctttgtccaaggtagacctcatcag 142  Q
    |||||||||||||||||||||||  ||||||||||||||| ||| ||||||||| || |||||||  || ||||||||| ||||||||||||||||||||    
T  46707941 atttctttcagtttctttccaaatttgtcaaatgcttccaatggctctgcatcatatatccaatgtttagtgtctctttctccaaggtagacctcatcag 46708040  T
Q  143 aagaatgtgtagacaaaatttctataagcgaaattccaacaagagtctgcaattgtcccgtgattgttttca-aaaaagctttatcaggatttgtcacaa 241  Q
    ||||||||| |||||  ||||||||||||||||  ||||||||| ||||||||||  |||  | |||||||| ||||||| || |||||||||| |||||    
T  46708041 aagaatgtgcagacagtatttctataagcgaaacgccaacaagaatctgcaattgcgccgcaactgttttcagaaaaagccttctcaggatttgccacaa 46708140  T
Q  242 gttcatcataatctatagttcctttctcaggcatgaatcggcgacttattgttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttac 341  Q
    |||||| ||| |||||||||||||||||||||||||| | ||||||| ||||| |||  || || ||||||| |||| |||||||||||||||| |||||    
T  46708141 gttcataatactctatagttcctttctcaggcatgaaactgcgactttttgttagac-attaggcgagtaacttgcataaggatattgtccaaattttac 46708239  T
Q  342 agctgcatgtagagctgaagcaatccatata 372  Q
    |||||||||||| ||||||||||||||||||    
T  46708240 agctgcatgtagggctgaagcaatccatata 46708270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 113 - 488
Target Start/End: Complemental strand, 36926615 - 36926240
Alignment:
Q  113 tgtctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctataagcgaaattccaacaagagtctgcaattgtcccgtgattgtttt 212  Q
    ||||||| |||||||||||||||||||||  || |||  ||||||| ||||| | ||| ||||  |||| || ||  || || |||   |||||||||||    
T  36926615 tgtctctctgtccaaggtagacctcatcactagcatgcctagacaatatttccacaagtgaaagaccaagaacagcttgaaactgtgaagtgattgtttt 36926516  T
Q  213 caaaaaagctttatcaggatttgtcacaagttcatcataatctatagttcctttctcaggcatgaatcggcgacttattgttggacggtttggtgagtaa 312  Q
    || ||||||||| |||||||||  || ||||||||  || |||  ||||||||| |||||||||| ||| || || || |  |||||  | ||||  ||     
T  36926515 cagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttcaggcatgagtcgtcggctcatagaaggacgactcggtggatag 36926416  T
Q  313 cctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgcatgtttccgtcaactcttccactgtttgca 412  Q
    ||| || | ||||| ||||||||||| || || ||||| ||||||||||||||||||||||| || ||||| |||||  ||| |||||| |  || ||||    
T  36926415 cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatcagctcttcgagagtatgca 36926316  T
Q  413 tctttggccaccaaggctcgtttttcttgtcgccgtgaccttcttgtatcaattccttccaccaagattgtagttc 488  Q
    ||||||||||||||||||| | ||||||||| || ||||| ||||   | | |||||||||||||||||| |||||    
T  36926315 tctttggccaccaaggctcatctttcttgtcaccatgaccctcttcccttatttccttccaccaagattgaagttc 36926240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 383
Target Start/End: Original strand, 47126843 - 47126934
Alignment:
Q  292 gttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgca 383  Q
    |||||||| ||||||  |||||||||| |||| |||||||||||||| ||||||||||| | ||| ||||| | ||||||||| || |||||    
T  47126843 gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatataataatggtgca 47126934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 488
Target Start/End: Original strand, 6262182 - 6262408
Alignment:
Q  262 cctttctcaggcatgaatcggcgacttattgttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaag 361  Q
    |||||||||||||| ||||| | ||| |  ||||||||||||  |  | ||||| || | |||||||||||||| || ||||||||||| ||||||||||    
T  6262182 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 6262281  T
Q  362 caatccatataatgattgtgcatgtttccgtcaactcttccactgtttgcatctttggccaccaaggctcgtttttcttgtcgccgtgaccttcttgtat 461  Q
    || ||||||| || ||  ||||   ||   ||||||||||    |||||||| || |||||||| ||||||| ||||||||| || |||||  ||| ||     
T  6262282 cagtccatatgataatactgcaaacttgaatcaactcttcgcgagtttgcattttcggccaccatggctcgtctttcttgtcaccatgacccacttctac 6262381  T
Q  462 caattccttccaccaagattgtagttc 488  Q
     | ||| |||||||||||||| |||||    
T  6262382 aacttctttccaccaagattggagttc 6262408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 6273451 - 6273500
Alignment:
Q  322 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 371  Q
    |||||||||||||| || ||||||||||| || |||||||||||||||||    
T  6273451 ggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 6273500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 6389882 - 6389931
Alignment:
Q  322 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 371  Q
    |||||||||||||| || ||||||||||| || |||||||||||||||||    
T  6389882 ggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 6389931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 6368901 - 6368949
Alignment:
Q  323 gatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 371  Q
    ||||||||||||| || ||||||||||| || |||||||||||||||||    
T  6368901 gatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 6368949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 373
Target Start/End: Original strand, 6423160 - 6423208
Alignment:
Q  325 tattgtccaaagtttacagctgcatgtagagctgaagcaatccatataa 373  Q
    ||||||||||| || ||||||||||| || |||||||||||||||||||    
T  6423160 tattgtccaaaattaacagctgcatgaagtgctgaagcaatccatataa 6423208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 6351240 - 6351291
Alignment:
Q  322 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataa 373  Q
    ||||||||||| || || ||||||||||| || |||||||||||||||||||    
T  6351240 ggatattgtccgaaattaacagctgcatgaagtgctgaagcaatccatataa 6351291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 6456154 - 6456205
Alignment:
Q  320 aaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 371  Q
    ||||||| ||||||||||| || |||||||| |||||||||||| |||||||    
T  6456154 aaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatat 6456205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 7457983 - 7458030
Alignment:
Q  324 atattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 371  Q
    |||||||||||| || ||||||||||| || |||||||||||||||||    
T  7457983 atattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 7458030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 7470385 - 7470432
Alignment:
Q  324 atattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 371  Q
    |||||||||||| || ||||||||||| || |||||||||||||||||    
T  7470385 atattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 7470432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 6449687 - 6449741
Alignment:
Q  320 aaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataat 374  Q
    ||||||||||||| || || ||||||||||| ||||| |||||| ||||||||||    
T  6449687 aaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatataat 6449741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 6362125 - 6362174
Alignment:
Q  322 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 371  Q
    |||||||||||||| || || |||||||| || |||||||||||||||||    
T  6362125 ggatattgtccaaaattaactgctgcatgaagtgctgaagcaatccatat 6362174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 6261939 - 6261995
Alignment:
Q  111 actgtctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctat 167  Q
    ||||||||||||||||||||||  ||||||||||| |||  | ||||| ||||||||    
T  6261939 actgtctctttgtccaaggtagtactcatcagaagcatgcctcgacaatatttctat 6261995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 6409129 - 6409177
Alignment:
Q  320 aaggatattgtccaaagtttacagctgcatgtagagctgaagcaatcca 368  Q
    |||||||||||||||| || ||||||||||| || |||||||| |||||    
T  6409129 aaggatattgtccaaaattaacagctgcatgaagtgctgaagccatcca 6409177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 9606339 - 9606278
Alignment:
Q  310 taacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 371  Q
    |||||| || |||||||||||||||| || ||||||||||| ||||| |||||| |||||||    
T  9606339 taacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatat 9606278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 42692174 - 42692217
Alignment:
Q  328 tgtccaaagtttacagctgcatgtagagctgaagcaatccatat 371  Q
    |||||||| || ||||||||||| ||||||||||||||||||||    
T  42692174 tgtccaaaattaacagctgcatgaagagctgaagcaatccatat 42692217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 42689887 - 42689835
Alignment:
Q  115 tctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctat 167  Q
    ||||||||||||||||| || |||||||||| |||| | ||||| ||||||||    
T  42689887 tctctttgtccaaggtaaacttcatcagaagcatgtcttgacaatatttctat 42689835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 452
Target Start/End: Original strand, 42692254 - 42692298
Alignment:
Q  408 ttgcatctttggccaccaaggctcgtttttcttgtcgccgtgacc 452  Q
    ||||||||| |||||||| |||||||||||||| || ||||||||    
T  42692254 ttgcatcttaggccaccatggctcgtttttcttatcaccgtgacc 42692298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University