View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19529_high_23 (Length: 389)

Name: NF19529_high_23
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19529_high_23
NF19529_high_23
[»] scaffold0013 (2 HSPs)
scaffold0013 (70-277)||(102164-102371)
scaffold0013 (30-62)||(102006-102038)
[»] chr4 (3 HSPs)
chr4 (70-275)||(154294-154499)
chr4 (70-275)||(100415-100620)
chr4 (70-275)||(10307662-10307867)
[»] chr7 (1 HSPs)
chr7 (70-280)||(13041209-13041419)
[»] chr8 (3 HSPs)
chr8 (70-275)||(5700912-5701117)
chr8 (70-275)||(5680859-5681064)
chr8 (70-275)||(5731501-5731706)
[»] chr3 (1 HSPs)
chr3 (70-274)||(12143013-12143217)


Alignment Details
Target: scaffold0013 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 70 - 277
Target Start/End: Original strand, 102164 - 102371
Alignment:
Q  70 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 169  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  102164 acctgaaaacgccagaggagatcaccgcagggcttgactttgaagcggttgttatagaaattcttacgagcttcttcaacttgggccctctcttcttcac 102263  T
Q  170 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  102264 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 102363  T
Q  270 catctttc 277  Q
    ||||||||    
T  102364 catctttc 102371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 102006 - 102038
Alignment:
Q  30 aaaaaggaataaagacaacactacaacagtata 62  Q
    |||||||||||||||||||| ||||||||||||    
T  102006 aaaaaggaataaagacaacaatacaacagtata 102038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 70 - 275
Target Start/End: Complemental strand, 154499 - 154294
Alignment:
Q  70 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 169  Q
    |||||||||||||| ||||| ||||| |||| ||| || ||||||||||| |||||||||||||||||||||| ||||||||| || || ||||||||||    
T  154499 acctgaaaacgccaaaggagatcaccacaggtcttaacattgaagcggttattatagaaattcttacgagcttcttcaacttgtgctctttcttcttcac 154400  T
Q  170 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 269  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||    
T  154399 tacctgcttctggatcatactcccatgtttgtcttcccacaaaactatttgtgctgaataagtatggctcattcccaccttctgctatcttcagcttcca 154300  T
Q  270 catctt 275  Q
    ||||||    
T  154299 catctt 154294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 70 - 275
Target Start/End: Complemental strand, 100620 - 100415
Alignment:
Q  70 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 169  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||| || || ||||||||||    
T  100620 acctgaaaacgccataggaggtcaccacagggcttgaccttgaatctgttgtcatagaaattcttacgagcttcttcaacttgtgctctttcttcttcac 100521  T
Q  170 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 269  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||   || ||| | ||||||||| ||||    
T  100520 tacctgcttctggatcatactcccatgtttgtcttcccacaaaattatttgtgctgaataagtatggctcattctttccctctccaatcttcagcttcca 100421  T
Q  270 catctt 275  Q
    ||||||    
T  100420 catctt 100415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 70 - 275
Target Start/End: Original strand, 10307662 - 10307867
Alignment:
Q  70 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 169  Q
    |||||||||||| | ||||||||||| |||| ||| |||||||| ||||| |||||||||||||||||| ||| ||||||||| || |||||||||||||    
T  10307662 acctgaaaacgcgaaaggaggtcaccacaggtcttaaccttgaaacggttattatagaaattcttacgaacttcttcaacttgagctctctcttcttcac 10307761  T
Q  170 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 269  Q
    |||||||||||||||| || ||||||||||| || |||||| | || ||||| |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  10307762 tacctgcttctggatcctattcccatgtttggctccccacagaattgtttgtgctgaataagtatgggtcattcccaccttctgctatcttcagcttcca 10307861  T
Q  270 catctt 275  Q
    ||||||    
T  10307862 catctt 10307867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 70 - 280
Target Start/End: Complemental strand, 13041419 - 13041209
Alignment:
Q  70 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 169  Q
    |||||||||||||| ||||||||||  ||  ||||||| || |||||||||||||| ||||||| |||||||| ||||||||| || ||||| ||   |     
T  13041419 acctgaaaacgccaaaggaggtcactacatagcttgactttaaagcggttgttataaaaattctgacgagcttcttcaacttgtgctctctcctccaaag 13041320  T
Q  170 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 269  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||| ||||| ||||||| |||||||| ||| ||||| ||||||||||||| ||||||    
T  13041319 tacctgcttttggatcatactcccatatttgtcttcctacaaagttgtttgtgctgaatatgtatgggtcattaccaccatctgctatcttcaacctcca 13041220  T
Q  270 catctttcttt 280  Q
    |||||||||||    
T  13041219 catctttcttt 13041209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 70 - 275
Target Start/End: Original strand, 5700912 - 5701117
Alignment:
Q  70 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 169  Q
    |||||||||||||| || ||||||| ||||||||| || ||||| || |||||||||||||  | ||| |||||||||||||| || ||||| ||   |     
T  5700912 acctgaaaacgccaaagaaggtcactgcagggcttaactttgaaacgattgttatagaaatgttgacgtgctttttcaacttgagctctctcctcagaag 5701011  T
Q  170 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 269  Q
    |||| || | ||||||| |||||||||| || || || | |||||||||||||||||||| |||||| | |||||| || ||||||||||||||||||||    
T  5701012 taccagcatttggatcaaactcccatgtctgcctccctaaaaagttatttgtactgaatatgtatggatcattccccccatctgctatcttcagcctcca 5701111  T
Q  270 catctt 275  Q
    ||||||    
T  5701112 catctt 5701117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 70 - 275
Target Start/End: Original strand, 5680859 - 5681064
Alignment:
Q  70 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 169  Q
    |||||||| ||||| || ||||||| ||||||||| || ||||| || |||| ||||||||  | ||| |||||||||||||| |  ||||| ||   |     
T  5680859 acctgaaagcgccaaagaaggtcactgcagggcttaactttgaaacgattgtcatagaaatgttgacgtgctttttcaacttgagatctctcctcaggag 5680958  T
Q  170 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 269  Q
    |||| || || | |||| |||||||||| || || ||||||||||||||||||||||||| |||||| |  |||||||| ||||||||||||||||||||    
T  5680959 taccagcatcagcatcaaactcccatgtctgcctccccacaaagttatttgtactgaatatgtatggatccttcccaccatctgctatcttcagcctcca 5681058  T
Q  270 catctt 275  Q
    ||||||    
T  5681059 catctt 5681064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 70 - 275
Target Start/End: Original strand, 5731501 - 5731706
Alignment:
Q  70 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 169  Q
    |||||||| ||||| || ||||||| |||||| || || ||||| || |||||||||||||  | ||| |||||||||||||| || ||||| ||   |     
T  5731501 acctgaaagcgccaaagaaggtcactgcagggtttaactttgaaacgattgttatagaaatgttgacgtgctttttcaacttgagctctctcctcagaag 5731600  T
Q  170 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 269  Q
    |||| || | ||||||| |||||||||| || || || | |||||||||||||||||||| || ||| | |||||| || ||||||||||||||||||||    
T  5731601 taccagcatttggatcaaactcccatgtctgcctccctaaaaagttatttgtactgaatatgtgtggatcattccccccatctgctatcttcagcctcca 5731700  T
Q  270 catctt 275  Q
    ||||||    
T  5731701 catctt 5731706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 70 - 274
Target Start/End: Original strand, 12143013 - 12143217
Alignment:
Q  70 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 169  Q
    |||||||| ||||| |||||||| || || ||||| ||||| || |||||| |||||||||| | |||||||| ||||||    || |  ||||| | |     
T  12143013 acctgaaagcgccaaaggaggtcgccacatggcttaaccttaaatcggttgatatagaaattgtgacgagcttcttcaaccattgctcgttcttcatgag 12143112  T
Q  170 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 269  Q
    ||||||| || || ||| | |||||||| |||||||| ||||||||||||||  |||||| ||| ||||  |||||||| ||||||||||| ||||||||    
T  12143113 tacctgcatcagggtcaaattcccatgtctgtcttcctacaaagttatttgtggtgaatatgtaagggtccttcccaccatctgctatcttaagcctcca 12143212  T
Q  270 catct 274  Q
    |||||    
T  12143213 catct 12143217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University