View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_high_25 (Length: 370)
Name: NF19529_high_25
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 37715794 - 37715915
Alignment:
| Q |
69 |
atgctaaataaattgaagcaaatgaaagttctagagagattcattattgtgatcatgggaaactttatttccttgtgagtttgacataacttcgttccct |
168 |
Q |
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| T |
37715794 |
atgctaaataaattgaagcaaatgaaagttctagagagattcattattgtgatcatgggaaactttatttccttgtgagtttgacataactttgttccct |
37715893 |
T |
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| Q |
169 |
attattatgagcaacaaccaga |
190 |
Q |
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| T |
37715894 |
attattatgagcaacaaccaga |
37715915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 211 - 355
Target Start/End: Original strand, 37715905 - 37716050
Alignment:
| Q |
211 |
caacaaccagattgtgattaagtgaatggaataaaa-atcatgttatgtatataatgtttaaagtgcgattttaataggaaaaatatattgcattgaatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37715905 |
caacaaccagattgtgattaagtgaatggaataaaaaatcatgttatgtatataatgtttaaagtgcgattttaataggaaaaatatattgcattgaatg |
37716004 |
T |
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| Q |
310 |
aatattagtttgttctctcnnnnnnnntaaaggaatatttgtttgt |
355 |
Q |
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| T |
37716005 |
aatattagtttgttctctcaaaaaaaataaaggaatatttgtttgt |
37716050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 37709464 - 37709577
Alignment:
| Q |
73 |
taaataaattgaagcaaatgaaagttctagagagattcattattgtgatcatgggaaac-tttatttccttgtgagtttgacataacttcgttccctatt |
171 |
Q |
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|||||||||||||| ||||| || ||||||||| || ||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||| |
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| T |
37709464 |
taaataaattgaagtaaatgtaacttctagaga--ttaattattgtgatcatgggaaacttttgttgccttgtgagtttgacataactt-gttccctatt |
37709560 |
T |
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| Q |
172 |
attatgagcaacaacca |
188 |
Q |
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||||| ||||||||||| |
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| T |
37709561 |
attataagcaacaacca |
37709577 |
T |
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