View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19529_high_41 (Length: 268)
Name: NF19529_high_41
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_high_41 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 6923310 - 6923462
Alignment:
| Q |
12 |
atgaatgtaaatataatta---ttattatattaaattttgtaatttgtgttaaatcataaatctgttaacattttatccgatttaatcatactaacctac |
108 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6923310 |
atgaatgtaaatataattattattattatattaaattttgtaatttgtgttaaatcataaatctgttaacattttatccgatttaatcatactaacctac |
6923409 |
T |
|
| Q |
109 |
atctatatttgacatatttaatcaacattctattaaaaaatagaattttaata |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6923410 |
atctatatttgacatatttaatcaacattctattataaaatagaattttaata |
6923462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 153 - 268
Target Start/End: Original strand, 6924676 - 6924791
Alignment:
| Q |
153 |
attttaataagatatgtcatctaaaataaatagtaacgtaagttttaagtaggtaaagctttaaaattggcctctaacacgtcaaaggtcatactcaaat |
252 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6924676 |
attttaataagatgtgtcatctaaaataaatagtaacgtaagttttaagtaggtaaagctttaaaattggcctctaacacgtcaaaggtcatactcaaat |
6924775 |
T |
|
| Q |
253 |
caatatttttcatgaa |
268 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6924776 |
caatatttttcatgaa |
6924791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 18988965 - 18988910
Alignment:
| Q |
28 |
ttattattatattaaattttgtaatttgtgttaaatcataaatctgttaacatttt |
83 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| | |||||| |||||||||||| |
|
|
| T |
18988965 |
ttattattatattatattttgtaatttgaattaatttataaatttgttaacatttt |
18988910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 817696 - 817745
Alignment:
| Q |
29 |
tattattatattaaattttgtaatttgtgttaaatcataaatctgttaac |
78 |
Q |
| |
|
||||||||||||| |||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
817696 |
tattattatattatattttgtactttgaattaaatcataaatttgttaac |
817745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 38303949 - 38303895
Alignment:
| Q |
29 |
tattattatattaaattttgtaatttgtgttaaatcataaatctgttaacatttt |
83 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||||| ||||||| |||| |
|
|
| T |
38303949 |
tattattatattaaattttgtaatttggataaaattataaatttgttaacttttt |
38303895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 47044541 - 47044504
Alignment:
| Q |
33 |
attatattaaattttgtaatttgtgttaaatcataaat |
70 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| |
|
|
| T |
47044541 |
attatagtagattttgtaatttgtgttaaatcataaat |
47044504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University