View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_high_48 (Length: 230)
Name: NF19529_high_48
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 1814378 - 1814229
Alignment:
| Q |
65 |
tgaggggacaaggacaatttctagtttcagtttattgcttaactcaccaattttggaatataacagtggattagcatataagtgagcatatcaaagcacn |
164 |
Q |
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| T |
1814378 |
tgaggggacaaggacaatttctagttgcagtttattgcttaactcaccaatgttggaatataacagtggattagcatataagtgagcatatcaaagcac- |
1814280 |
T |
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| Q |
165 |
nnnnnnnnggagtttataaaaaagataacaaccaaccacaagtcacctatg |
215 |
Q |
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| T |
1814279 |
aaaaaaaaggagtttataaaaaagataacaaccaaccacaagtcacctatg |
1814229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 1829526 - 1829490
Alignment:
| Q |
178 |
ttataaaaaagataacaaccaaccacaagtcacctat |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
1829526 |
ttataacaaagataacaaccaaccacaagtcacctat |
1829490 |
T |
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