View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_high_49 (Length: 221)
Name: NF19529_high_49
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_high_49 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: scaffold0392 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 16257 - 16393
Alignment:
| Q |
20 |
atgataataatatcaacaatcaaacatcataaa-ttttaacnnnnnnntaaaatgaaaccatgtatgagaggtctcgcatcataagcttggctagaggtt |
118 |
Q |
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| T |
16257 |
atgataataatatcaacaatcaaacatcataaaattttaacaaaaaaataaaatgaaaccatgtatgagaggtctcgcatcataagcttggc--gaggtt |
16354 |
T |
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| Q |
119 |
agnnnnnnnnnggtaaagcacattgtagtgcatgcatat |
157 |
Q |
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| T |
16355 |
agaaaaaaaaaggtaaagcacattgtagtgcatgcatat |
16393 |
T |
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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 14582924 - 14582876
Alignment:
| Q |
154 |
atatcattctttcatatcgttgtggtagcacatccaaacacaacggaat |
202 |
Q |
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| T |
14582924 |
atatcattctttcatatcattgtggtagcacatccaaacacaacggaat |
14582876 |
T |
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