View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_high_5 (Length: 653)
Name: NF19529_high_5
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 8 - 634
Target Start/End: Original strand, 38246922 - 38247551
Alignment:
| Q |
8 |
cagcacagacacacgccacaagagattttttatcttggggggagctttaatgttccaaattaagtcccaacgaccaaatttatgcaaatgaatattgtca |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38246922 |
cagcccagacacacgccacaagagattttttatcttggggggagatttaatgttccaaattaagtcccaacgaccagatttatgcaaatgaatattgtca |
38247021 |
T |
|
| Q |
108 |
aaaatttcattcatacatattctgtaagcactgcgaacgaaatacctaccattttttcagcctttccaaaccaatttttcacagtcaaatgggcagtatg |
207 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247022 |
acaatttcattcatacatattctgtaagcactgcgaacgaaatacctaccattttttcagcctttccaaaccaatttttcacagtcaaatgggcagtatg |
38247121 |
T |
|
| Q |
208 |
ttgatcaaataagttataaattaaaagagcatttcatattctttgctgctctctttcacatcgttcacattcaatgggaaacagtgttacttatctaaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38247122 |
ttgatcaaataagttataaattaaaagagcatttcatactctttgctgctctctttcacatcgttcacattcaatgggaaacatggttacttatctaaac |
38247221 |
T |
|
| Q |
308 |
atttctctctcaagtttacattactattatggttttttgggagtttcttcgctgcactctttcacaatgcctccagttcttcttctttcactaatttttt |
407 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247222 |
atttctctctcaagtttactttactattatggttttttgggagtttcttcgctgctctctttcacaatgcctccagttcttcttctttcactaatttttt |
38247321 |
T |
|
| Q |
408 |
ccttcccacagttgttacatggtagaacagacttctagcatagccatatgaaacaatatagtggattcagccaaaattacaaatttgtttttctcctata |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247322 |
ccttcccacagttgttacatggtagaacagacttctagcatagccatatgaaacaatatagtggattcagccaaaattacaaatttgtttttctcctata |
38247421 |
T |
|
| Q |
508 |
gctagctgaatacacagaaatgtaaattattcagttacccttttca---atcatgtctttattcatctttgataaatcaatcatattttactttgatacc |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247422 |
gctagctgaatacacagaaatgtaaattattcagttacccttttcaatcatcatgtctttattcatctttgataaatcaatcatattttactttgatacc |
38247521 |
T |
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| Q |
605 |
atcaatgacacgctatttatattatcatat |
634 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
38247522 |
atcaatgacacgctatttatattatcatat |
38247551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 465 - 638
Target Start/End: Original strand, 38252412 - 38252586
Alignment:
| Q |
465 |
atagtggattcagccaaaattacaaatttgtttttctcctatagctagctgaatacacagaaatgta-aattattcagttacccttttcaatcatgtctt |
563 |
Q |
| |
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|||||| ||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||| | || ||||||||||||||||||| |||||||||||| |
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| T |
38252412 |
atagtgaattaagccaaaaatacaaatttgtttttctcctatatctagcagaatacacagagaagtgtaattattcagttaccctttccaatcatgtctt |
38252511 |
T |
|
| Q |
564 |
tattcatctttgataaatcaatcatattttactttgataccatcaatgacacgctatttatattatcatatatgt |
638 |
Q |
| |
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||||||||||||||||||| ||||||| |||| | |||||||||||||||||| | |||||| ||||||||||| |
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| T |
38252512 |
tattcatctttgataaatcgatcatatcttaccataataccatcaatgacacgccacttatatcatcatatatgt |
38252586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 579 - 629
Target Start/End: Original strand, 38242254 - 38242304
Alignment:
| Q |
579 |
aatcaatcatattttactttgataccatcaatgacacgctatttatattat |
629 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38242254 |
aatcactcatattttactttgataccatcaatgacacgccatttatattat |
38242304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 492 - 612
Target Start/End: Original strand, 38213038 - 38213155
Alignment:
| Q |
492 |
ttgtttttctcctatagctagctgaatacacagaaatgt-aaattattcagttacccttttcaatcatgtctttattcatctttgataaatcaatcatat |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | || |||| |||||||| ||| ||||| ||| ||||||| |||||| ||||||||||| |
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| T |
38213038 |
ttgtttttctcctatagctagctgaatacaaagagaagtgtaatttctcagttacacttgccaatcttgtatttattcctctttg----atcaatcatat |
38213133 |
T |
|
| Q |
591 |
tttactttgataccatcaatga |
612 |
Q |
| |
|
||||||||| |||||| |||| |
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| T |
38213134 |
attactttgacaccatccatga |
38213155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 38237029 - 38237087
Alignment:
| Q |
580 |
atcaatcatattttactttgataccatcaatgacacgctatttatattatcatatatgt |
638 |
Q |
| |
|
||||||||||| ||||||||| |||||| |||| || | | |||||||||||||||||| |
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|
| T |
38237029 |
atcaatcatatattactttgacaccatccatgaaactccacttatattatcatatatgt |
38237087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 12223845 - 12223729
Alignment:
| Q |
47 |
gggagctttaatgttccaaattaagtcccaacgaccaaatttatgcaaatgaatattgtcaaaaatttcattcatacatattctgtaagcactgcgaacg |
146 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||||||| | ||| |
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| T |
12223845 |
gggagctttcatgttccaaattaaatcccaacgacccgatttatgcaaatgagtattgtcaacaatttcattcatacatattttgtaagcactacaaaca |
12223746 |
T |
|
| Q |
147 |
aaatacctaccattttt |
163 |
Q |
| |
|
|||||||||||||||| |
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| T |
12223745 |
gaatacctaccattttt |
12223729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 12226012 - 12225885
Alignment:
| Q |
16 |
acacacgccacaagagattttttatcttggggggagctttaatgttccaaattaagtcccaacgaccaaatttatgcaaatgaatattgtcaaaaatttc |
115 |
Q |
| |
|
|||||| |||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||| | | ||||| ||||||| ||||||||| |||||| |
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| T |
12226012 |
acacacaccacaagagaatttcgatcttagggggagctttgatgttccaaattaaatcccaacgatccagtttatccaaatgagtattgtcaacaatttc |
12225913 |
T |
|
| Q |
116 |
attcatacatattctgtaagcactgcga |
143 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
12225912 |
gttcatacatattctgtaagcactgcga |
12225885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 12223677 - 12223617
Alignment:
| Q |
185 |
ttcacagtcaaatgggcagtatgttgatcaaataagttataaattaaaagagcatttcata |
245 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||| |
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| T |
12223677 |
ttcacaatcaaatgggtagtatgttgatcaaataagatataaattaaaggagcattccata |
12223617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 33 - 163
Target Start/End: Original strand, 9170934 - 9171064
Alignment:
| Q |
33 |
ttttttatcttggggggagctttaatgttccaaattaagtcccaacgaccaaatttatgcaaatgaatattgtcaaaaatttcattcatacatattctgt |
132 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| ||||||| ||| |||||||||| ||| ||||||||| |||||| |||||||||||| ||| |
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|
| T |
9170934 |
ttttttatcttgggggaaactttaatgttccaaattaaatcccaacaacccgatttatgcaagtgagtattgtcaacaatttctttcatacatattatgt |
9171033 |
T |
|
| Q |
133 |
aagcactgcgaacgaaatacctaccattttt |
163 |
Q |
| |
|
||||| | |||||| ||||| |||||||||| |
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|
| T |
9171034 |
aagcattacgaacggaatacataccattttt |
9171064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 9171116 - 9171172
Alignment:
| Q |
185 |
ttcacagtcaaatgggcagtatgttgatcaaataagttataaattaaaagagcattt |
241 |
Q |
| |
|
||||||||||||| || |||||||||||||||| ||||| |||||||| |||||||| |
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|
| T |
9171116 |
ttcacagtcaaatcggtagtatgttgatcaaatgagttagaaattaaaggagcattt |
9171172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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