View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_high_55 (Length: 207)
Name: NF19529_high_55
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_high_55 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: scaffold0392 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 16265 - 16393
Alignment:
| Q |
14 |
aatatcaacaatcaaacatcataaa-ttttaacnnnnnnntaaaatgaaaccatgtatgagaggtctcgcatcataagcttggctagaggttagnnnnnn |
112 |
Q |
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| T |
16265 |
aatatcaacaatcaaacatcataaaattttaacaaaaaaataaaatgaaaccatgtatgagaggtctcgcatcataagcttggc--gaggttagaaaaaa |
16362 |
T |
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| Q |
113 |
nnnggtaaagcacattgtagtgcatgcatat |
143 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
16363 |
aaaggtaaagcacattgtagtgcatgcatat |
16393 |
T |
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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 14582924 - 14582876
Alignment:
| Q |
140 |
atatcattctttcatatcgttgtggtagcacatccaaacacaacggaat |
188 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14582924 |
atatcattctttcatatcattgtggtagcacatccaaacacaacggaat |
14582876 |
T |
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