View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_high_56 (Length: 207)
Name: NF19529_high_56
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_high_56 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 39938996 - 39938820
Alignment:
| Q |
14 |
ataatactcgttaaggagattatatgtttttctttgtaaatagtcaatatccttgaaattaaagaaacacatagtcaatatccttgcattccttcttcat |
113 |
Q |
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| T |
39938996 |
ataacactcgttaaagagattatatgtttttctttgtaaatagtcaatatccttgaaattaaagaaacacatagtcaatatccttgcattccttcttcat |
39938897 |
T |
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| Q |
114 |
tttcattgtaaatcccctcttcattccttctttacattcttaagagagtaagcggcaaaggatccaagtccgatatt |
190 |
Q |
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| T |
39938896 |
tttcattgtaaatcccctcttcattccttctttacattcttaagagagtaagcggcaaaggatccaagtccgatatt |
39938820 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 240542 - 240502
Alignment:
| Q |
105 |
cttcttcattttcattgtaaatcccctcttcattccttctt |
145 |
Q |
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| T |
240542 |
cttctgcattttcattgtaaatcctctgttcattccttctt |
240502 |
T |
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