View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19529_high_7 (Length: 645)
Name: NF19529_high_7
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Complemental strand, 19555616 - 19555146
Alignment:
| Q |
8 |
gacatcatcaggtacattcaatgttgaaaatcatgttctccccaaaacctatgatatacgccatgtggctaaaggtaccaatgtggacatcaaagggaaa |
107 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
19555616 |
gacatcatcaggtacagtcaatgctgaaaatcatgttctccccaaaacctatgatatacgccacgtggctaaaggtaccaatgtggacatcaaagggaaa |
19555517 |
T |
|
| Q |
108 |
actcaattcaaaagagctgggaaaattttgaagcccaagccacgagttggttcagtcgactcgactacaatgttgaattcccttttgaagaataccaaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |
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|
| T |
19555516 |
actcaattcaaaagagctgggaaaattttgaagcccaagccacgagttggttcagtcgactcggctacaatgttgaaatcccttttgaacaataccaaca |
19555417 |
T |
|
| Q |
208 |
tggaaattggggagagttcatcaagggttcaaacagagaaaatcaatgaagttgctaagaatcaagtgaatttggaactcactcttggctttgattgcca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19555416 |
tggaaattggggagagttcatcaagggttcaaacagagaaaatcaatgaagctgctgagaatcaagtgaatttggaactcactcttggctttgattgcca |
19555317 |
T |
|
| Q |
308 |
atcaactaagagcaagaaagtattagataaatgatcgatttattatatgtaattcagtttcaattgagatgtacttttagacagcggaacaaatgatcaa |
407 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19555316 |
ttcaactaagagcaagaaaatattagataaatgatcgatttattatatgtcattcagtttcaattgagatgtacttttagacagtggaacaaatgatcaa |
19555217 |
T |
|
| Q |
408 |
a-gttgtttgttggcaccttaatttgtgtcatccttttcagtcatatatgatgagttgtactccctccgtt |
477 |
Q |
| |
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| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19555216 |
aggttgtttgctggcaccttaatttgtgtcatccttttcagtcatatatgatcagttgtactccctccgtt |
19555146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 477
Target Start/End: Complemental strand, 19582915 - 19582446
Alignment:
| Q |
9 |
acatcatcaggtacattcaatgttgaaaatcatgttctccccaaaacctatgatatacgccatgtggctaaaggtaccaatgtggacatcaaagggaaaa |
108 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | |
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|
| T |
19582915 |
acatcatcaggtacagtcaatgctgaaaatcatgttctccccaaaacctatgatatacgccacgtggccaaaggtaccaatgtggacgtcaaagggaaga |
19582816 |
T |
|
| Q |
109 |
ctcaattcaaaagagctgggaaaattttgaagcccaagccacgagttggttcagtcgactcgactacaatgttgaattcccttttgaagaataccaacat |
208 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
19582815 |
ctcaattcaaaagagttgggaaaattttgaagcccaagccacgagttggttcagtcaactcgactaccatgttgaaatcccttttgaagaataccaacat |
19582716 |
T |
|
| Q |
209 |
ggaaattggggagagttcatcaagggttcaaacagagaaaatcaatgaagttgctaagaatcaagtgaatttggaactcactcttggctttgattgccaa |
308 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19582715 |
ggaaattggggagaggtcatcaagggttcaaacacagaaaatcaatgaagctgttgagaatcaagtgaatttggaactcactcttggctttgattgccaa |
19582616 |
T |
|
| Q |
309 |
tcaactaagagcaagaaagtattagataaatgatcgatttattatatgtaattcagtttcaattgagatgtacttttag--acagcggaacaaatgatca |
406 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| |||||||||||||| |
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|
| T |
19582615 |
tcaactaagagcaagaaaatattagataaatgatcgatttattatatgtaattcagtctcaatt--gatgtacttttagacacagtggaacaaatgatca |
19582518 |
T |
|
| Q |
407 |
aa-gttgtttgttggcaccttaatttgtgtcatccttttcagtcatatatgatgagttgtactccctccgtt |
477 |
Q |
| |
|
|| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
19582517 |
aaggttgtttgctggtaccttaatttgtgtcatccttttcagtcatatatgatgagttgtgctccctccgtt |
19582446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 474
Target Start/End: Original strand, 18687062 - 18687535
Alignment:
| Q |
8 |
gacatcatcaggtacattcaatgttgaaaatcatgttctccccaaaacctatgatatacgccatgtggctaaaggtaccaatgtggacatcaaagggaaa |
107 |
Q |
| |
|
|||||| ||||||||| |||||| ||||||||||||||| || ||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||| |
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|
| T |
18687062 |
gacatcttcaggtacactcaatgctgaaaatcatgttcttccaaaaacatatgatatacgccacgtggcaaaagataccaatgtggacatcaaagggaaa |
18687161 |
T |
|
| Q |
108 |
actcaattcaaaagagctgggaaaattttgaagcccaagccacgagttggttcagtcgactcgactacaatgttgaattcccttttgaagaataccaaca |
207 |
Q |
| |
|
|||||||||||||||| |||| || || |||||||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||| |
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|
| T |
18687162 |
actcaattcaaaagagttgggcaagttctgaagcccaagccacgagttggttcaatcgactcggctacaatgttgaaatctcttttgaagaataccaaca |
18687261 |
T |
|
| Q |
208 |
tggaaattggggagagttcatcaagggttcaaacagagaaaatcaatgaagttgctaagaatcaagtgaatttggaactcactcttggctttgattgcca |
307 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
18687262 |
tggaaattggggagacttcatcaagggttcaaacagagaaaattaatgaagctgctgagaatcaagtgaatttggaactcactcttggatttgatagcca |
18687361 |
T |
|
| Q |
308 |
atcaactaagagcaagaaagtattagataaatgatcgatttattatatgtaattcagtttcaattgagatgtactt------ttagacagcggaacaaat |
401 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||| |
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| T |
18687362 |
atcaactaagggcaagaaaatattagataaatgatcgatttattatatgtaattcagtttcaattgggatgtactttttttattagacaaaggaataaat |
18687461 |
T |
|
| Q |
402 |
gatcaaa-gttgtttgttggcaccttaatttgtgtcatccttttcagtcatatatgatgagttgtactccctcc |
474 |
Q |
| |
|
|||||| ||| |||||| |||||||| || |||||||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
18687462 |
tatcaaaggttatttgtttgcaccttatttaatgtcatcctttttagtcatatatgttgacttgtactccctcc |
18687535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 479 - 544
Target Start/End: Complemental strand, 19582179 - 19582114
Alignment:
| Q |
479 |
cttacacctgattctttcttatttcaatttaaaaatgacaaaagaatcttcattataaacatataa |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
19582179 |
cttacacctgattctttcttatttcaatttaaaaatgacaatagaatcttcattataagcatataa |
19582114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 479 - 544
Target Start/End: Complemental strand, 19554883 - 19554818
Alignment:
| Q |
479 |
cttacacctgattctttcttatttcaatttaaaaatgacaaaagaatcttcattataaacatataa |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
19554883 |
cttacacctgattctttcttatttcaatttaaaaatgacaatagaatattcattataagcatataa |
19554818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 575 - 628
Target Start/End: Complemental strand, 19582083 - 19582030
Alignment:
| Q |
575 |
cttctaaatacaaaggttatatacatttagtttcaaatgataatcgagacaaag |
628 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19582083 |
cttctaagtacaaagtttatatacatttagtttaaaatgataatcgagacaaag |
19582030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 575 - 628
Target Start/End: Complemental strand, 19554787 - 19554737
Alignment:
| Q |
575 |
cttctaaatacaaaggttatatacatttagtttcaaatgataatcgagacaaag |
628 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
19554787 |
cttctaaatacaaagtttatatacatttagtttaaa---ataatcgagacaaag |
19554737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 575 - 625
Target Start/End: Original strand, 18687885 - 18687935
Alignment:
| Q |
575 |
cttctaaatacaaaggttatatacatttagtttcaaatgataatcgagaca |
625 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| | |||||||| |||||| |
|
|
| T |
18687885 |
cttctaaatacaaagtttagatacatttagtttaagatgataattgagaca |
18687935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 470
Target Start/End: Original strand, 50043041 - 50043509
Alignment:
| Q |
9 |
acatcatcaggtacattcaatgttgaaaatcatgttctccccaaaacctatgatatacgccatgtggctaaaggtaccaatgtggacatcaaagggaaaa |
108 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
50043041 |
acatcatcaggtacattcaatgctgaaaatcatgttcaccccaaaacctatgatatacgccatgtggcaaaaggtaccaatgtggacatcaaagggaaaa |
50043140 |
T |
|
| Q |
109 |
ctcaattcaaaagagctgggaaaattttgaagcccaagccacgagttggttcagtcgactcgactacaatgttgaattcccttttgaagaataccaacat |
208 |
Q |
| |
|
||||||||||||||| |||| || || |||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50043141 |
ctcaattcaaaagagttgggcaacttctgaagctcaagccacgagttggttcagtcgactcatctacaatgttgaaatcccttttgaagaataccaacat |
50043240 |
T |
|
| Q |
209 |
ggaaattggggagagttcatcaagggttcaaacagagaaaatcaatgaagttgctaagaatcaagtgaatttggaactcactcttggctttgattgccaa |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50043241 |
ggaaattggggagacttcatcaagggttcaaacagagaaaattaatgaagctgttgagaatcaagtgaatttgaaactcactcttggctttgattgccaa |
50043340 |
T |
|
| Q |
309 |
tcaactaagagcaagaaagtattagataaatgatcgatttattatatgtaattcagtttcaattgagatgtactttt------agacagcggaacaaatg |
402 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||| |
|
|
| T |
50043341 |
tcaactaagggcaagaaaatattagataaacgatcgatttattatatgtaattcagtttcaatggagatgtactatttttatcagacaatggaacaaatg |
50043440 |
T |
|
| Q |
403 |
atcaaa-gttgtttgttggcaccttaatttgtgtcatccttttcagtcatatatgatgagttgtactcc |
470 |
Q |
| |
|
|||||| | |||||||| |||||||||||| |||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
50043441 |
atcaaaggctgtttgtttgcaccttaatttatgtcatcctttttagtcatatatgctgagttgtactcc |
50043509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 544
Target Start/End: Original strand, 50043803 - 50043851
Alignment:
| Q |
496 |
cttatttcaatttaaaaatgacaaaagaatcttcattataaacatataa |
544 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
50043803 |
cttatttcaattcaaaaatgacaaaagaatcttcactataagcatataa |
50043851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 575 - 628
Target Start/End: Original strand, 50043888 - 50043941
Alignment:
| Q |
575 |
cttctaaatacaaaggttatatacatttagtttcaaatgataatcgagacaaag |
628 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| | |||||||| ||||||||| |
|
|
| T |
50043888 |
cttctaaatacaaagtttagatacatttagtttaagatgataattgagacaaag |
50043941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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