View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_1 (Length: 1008)
Name: NF19529_low_1
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 836; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 836; E-Value: 0
Query Start/End: Original strand, 15 - 899
Target Start/End: Complemental strand, 29466002 - 29465114
Alignment:
| Q |
15 |
cagagagcaagaagagatcatcaaaaagtgcaaagacttcactgctaggctgatgaatagaagaaataacagtccttccatcacgagcaacatttctaag |
114 |
Q |
| |
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| T |
29466002 |
cagagagcaagaaaagatcatcaaaaagtgcaaagacttcactgctaggctgatgaatagaagaaataacagtccttccatcacgagcaacatttctaag |
29465903 |
T |
|
| Q |
115 |
agtttggacaacaaaaaatgcagatgcactgtccaaaccactagtcggttcatcaagaaacagcaaccgaggccttgtgagaatctcaagtgcaatgcta |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29465902 |
agtttggacaacaaaaaatgcagaagcactgtccaaaccactagtcggttcatcaagaaacagcaaccgaggccttgtgagaatctcaagtgcaatgcta |
29465803 |
T |
|
| Q |
215 |
gttcttttcctttcgccaccacttatacctctcaaatgccagttacctattaacctatctgcacagtcatggagacccatttcaatgattgttgcatcaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29465802 |
gttcttttcctttcgccaccacttatacctctcaaatgccagttacctattaacctatctgcacagtcatggagacccatttcaatgattgttgcatcaa |
29465703 |
T |
|
| Q |
315 |
ctaagccgttgatttcttctttggacattgttgatggaagacgtaaatgtgctgaatatgttattgtttctttcactgtaagagttcctaacaacacatc |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29465702 |
ctaagccgttgatttcttctttggacattgttgatggaagacgtaaatgtgctgaatatgttattgtttctttcactgtaagagttcctaacaacacatc |
29465603 |
T |
|
| Q |
415 |
ttcttgtgttacgtatgcctgaagtttcaacatcaatta----atgagtatgatgaatgatatatttttattcaatgatctattatcgcatcatttcatg |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29465602 |
ttcttgtgttacgtatgcctgaagtttcaacatcaattaatgaatgagtatgatgaatgatatagttttattcaatgatctattatcgcatcatttcatg |
29465503 |
T |
|
| Q |
511 |
agtctgataaattatgtttaaacaagtgaatatacaaattggttcgaaattgtaagcaaagctcaaataatctcttatgtcattcaagattattcatttg |
610 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29465502 |
agtctgataaattatgtttaaacaagtgaatatacaaattggttcaaaattgtaagcaaagctcaaataatctcttatgtcattcaagattaatcatttg |
29465403 |
T |
|
| Q |
611 |
ttaagttctatcgttagagactatgatgtaatatgttaactggacatgttacattgcttgttgatgttacatcaatactagctcaaaagcgacaaatgtt |
710 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29465402 |
ttaagttctatcgttagagactatgatgtaatatgttaactggacatgttacattgcttgttgatgttacatcaatacgagctcaaaagcgacaaatgtt |
29465303 |
T |
|
| Q |
711 |
tctatgaaatttaggtcatttcagagacaaatttgcaggcagttacaattgtgcatgaactaactaccatcaaattagtccatgaaagcgtaagtttcat |
810 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29465302 |
tctatgaaatttaggtcatttcagagacaaatttgcaggcagttacaattgtgcatgaactaactactatcaaattagtccatgaaagcgtaagtttcat |
29465203 |
T |
|
| Q |
811 |
agacaaattaatctcgtgtaatgatattgatatgggatcaacgtggaaggattgcatattcgacaaacatatcatatcataaaccgtaa |
899 |
Q |
| |
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| T |
29465202 |
agacaaattaatctcgtgtaatgatattgatgtgggatcaacgtggaaggattgcatattcgacaaacatatcacatcataaaccgtaa |
29465114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 19 - 468
Target Start/End: Complemental strand, 29433167 - 29432718
Alignment:
| Q |
19 |
gagcaagaagagatcatcaaaaagtgcaaagacttcactgctaggctgatgaatagaagaaataacagtccttccatcacgagcaacatttctaagagtt |
118 |
Q |
| |
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||||||||| || || |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||||||||| |||||| |||||| |||||| |
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| T |
29433167 |
gagcaagaaaaggtcgtcaaaaagtgcaaatacttcactattgggctgatgaattgaagaaataacagtccttccatcatgagcaatatttctgagagtt |
29433068 |
T |
|
| Q |
119 |
tggacaacaaaaaatgcagatgcactgtccaaaccactagtcggttcatcaagaaacagcaaccgaggccttgtgagaatctcaagtgcaatgctagttc |
218 |
Q |
| |
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|| ||||||||||||||||| ||||| || || |||| ||| |||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
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| T |
29433067 |
tgaacaacaaaaaatgcagaagcactatctaagccacaagttggttcatcaagaaacaacaaacgaggctttgtgagaatctcaagtgcaatgctagttc |
29432968 |
T |
|
| Q |
219 |
ttttcctttcgccaccacttatacctctcaaatgccagttacctattaacctatctgcacagtcatggagacccatttcaatgattgttgcatcaactaa |
318 |
Q |
| |
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| T |
29432967 |
ttttcctttcaccgccgcttatacctctcagatgccagttacctattaacctatctgcacagtcttggagacccatttctatgattgttccatcgattat |
29432868 |
T |
|
| Q |
319 |
gccgttgatttcttctttggacattgttgatggaagacgtaaatgtgctgaatatgttattgtttctttcactgtaagagttcctaacaacacatcttct |
418 |
Q |
| |
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|| | ||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29432867 |
gctgctgacttcttctttggacattgttgacggaagacgtaaatgtgctgaatatgctatcgtttctttcactgtaagagttcctaacaacacatcttct |
29432768 |
T |
|
| Q |
419 |
tgtgttacgtatgcctgaagtttcaacatcaattaatgagtatgatgaat |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29432767 |
tgtgttacgtatgcctgaagtttcaacatcaattaatgagtatgatgaat |
29432718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 896 - 990
Target Start/End: Complemental strand, 29464783 - 29464689
Alignment:
| Q |
896 |
gtaaatgcatgtggaacattttcagtcattaaagaaatgaaaataggtgctcaaaataaattctgattagcaacaatatgtgttagtgtacttac |
990 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29464783 |
gtaaatgcatgtggaacattttcagtcattaaagaaatgaaaataggtgctcaaaataaattctgactagcaacaatatgtgttagtgtacttac |
29464689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 29 - 423
Target Start/End: Complemental strand, 29480208 - 29479814
Alignment:
| Q |
29 |
agatcatcaaaaagtgcaaagacttcactgctaggctgatgaatagaagaaataacagtccttccatcacgagcaacatttctaagagtttggacaacaa |
128 |
Q |
| |
|
||||||||||| | |||||| || ||||| || || |||||||| |||||||||||||| | |||||| |||||| ||||| | |||||| |||||| |
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|
| T |
29480208 |
agatcatcaaataatgcaaaaacctcactacttggttgatgaattgaagaaataacagttttcccatcatgagcaatgtttctcaaagtttgagcaacaa |
29480109 |
T |
|
| Q |
129 |
aaaatgcagatgcactgtccaaaccactagtcggttcatcaagaaacagcaaccgaggccttgtgagaatctcaagtgcaatgctagttcttttcctttc |
228 |
Q |
| |
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|| |||| || ||||||||||||||||| || || |||||||| |||| | | ||||| || ||||| |||||||| ||||||||||||||| |||| |
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| T |
29480108 |
aatatgctgaggcactgtccaaaccacttgttggctcatcaaggaacaagagacatggcctagtaagaatttcaagtgctatgctagttcttttcttttc |
29480009 |
T |
|
| Q |
229 |
gccaccacttatacctctcaaatgccagttacctattaacctatctgcacagtcatggagacccatttcaatgattgttgcatcaactaagccgttgatt |
328 |
Q |
| |
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||||||||||||||||| || ||||| || ||||| | ||||| ||||| || || |||||||| || || |||||| | || || | | | || | |
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|
| T |
29480008 |
tccaccacttatacctcttaagtgccaatttcctataagtctatcagcacaatcttgaagacccatctccattattgttccttctacaatgtcatttacc |
29479909 |
T |
|
| Q |
329 |
tcttctttggacattgttgatggaagacgtaaatgtgctgaatatgttattgtttctttcactgtaagagttcctaacaacacatcttcttgtgt |
423 |
Q |
| |
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|||||||| | |||||| | |||||| | ||||| |||||| || | |||||| ||| ||||||| || ||||| ||||| | ||||||||||| |
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| T |
29479908 |
tcttcttttgtcattgtagctggaagccttaaatttgctgagtaagatattgtctctctcactgttagtgttcccaacaatatgtcttcttgtgt |
29479814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 686
Target Start/End: Original strand, 22602464 - 22602531
Alignment:
| Q |
619 |
tatcgttagagactatgatgtaatatgttaactggacatgttacattgcttgttgatgttacatcaat |
686 |
Q |
| |
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|||| |||||| ||||||||| | ||||||||||||||||| ||||||| |||||| | |||||||| |
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| T |
22602464 |
tatctttagaggctatgatgtgacatgttaactggacatgtcacattgcacgttgatctcacatcaat |
22602531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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