View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_11 (Length: 564)
Name: NF19529_low_11
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 252 - 551
Target Start/End: Original strand, 13133984 - 13134283
Alignment:
| Q |
252 |
cagtcaaaatctatgcattaattcatttccaatagtacnnnnnnnccaattaattgattaattaatgtgtgaaaagtcacgttcattcaaatactataaa |
351 |
Q |
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| T |
13133984 |
cagtcaaaatctatgcattaattcatttccaatagtactttttttccaattaattgattaattaatgtgtgaaaagtcacgttcattcaaatactatata |
13134083 |
T |
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| Q |
352 |
tacctatacactaacgctgctagccacaaacaaaaactcttgttcaaaacatgccaaatcttgatcccaatctccttaattctgattcaaattctaatgt |
451 |
Q |
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| T |
13134084 |
tacctatacactaacgctgccagccacaaacaaaaactcttgttcaaaacatgccaaatcttgatcccaatctccttaattctgattcaaattctaatgt |
13134183 |
T |
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| Q |
452 |
ctatgccaccactatgtataacaacaatcaacctcaaacactgccagatgagtttcaacaacagatgaacgaggttaatcactttatcacatcacaggtt |
551 |
Q |
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| T |
13134184 |
ctatgccacaactatgtataacaacaatcaacctctaacactgccaaatgagtttcaacaacagatggacgaggttaatcactttatcacatcacaggtt |
13134283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 13133757 - 13133933
Alignment:
| Q |
25 |
caaagattcatttatattcagaaaatcaattatttccattttcaaataaacaaaatttaaatataataatatgttacagctttttccacactcatcttta |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13133757 |
caaagattcatttatattcagaaaatcaattatttccattttcaaataaaaaaaaattaaatataataatatcttacagctttttccacactcatcttta |
13133856 |
T |
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| Q |
125 |
atgcctacactaaacatgtaatataaatcagttaagaaagaagaggaagaaagttataatacaccacacggattcct |
201 |
Q |
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| T |
13133857 |
atgcctacactaaacatgtaatataaatcagttaagaaagaagaggaagaaagttataatacaccacacggattcct |
13133933 |
T |
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