View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19529_low_13 (Length: 540)
Name: NF19529_low_13
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 44848252 - 44848759
Alignment:
| Q |
18 |
aggttattctgacatcattggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgacgggccatattggatgatttcata |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44848252 |
aggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgacgggccatattggatgatttcata |
44848351 |
T |
|
| Q |
118 |
cggctattttcttgccttatcgttgatctacattttatgttttgtgacgtttggctcagtcttcggtaagaatataaccatttaactccgttcttggcat |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44848352 |
cggctattttcttgccttatcggtgatctacattttatgttttgtgacgtttggctcagtctttggtaagaatataaccatttaactccgttcttggcat |
44848451 |
T |
|
| Q |
218 |
tttcccattctgtctgacactgctgacttcattttcaggattaaaattcttcaccttgaatgactacagcatccaattcatattttatttcatctatata |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44848452 |
tttcccattctttctgacactgctgacttcattttcaggattaaaattcttcaccttgaatgactacagcatccaattcatattttatttcatctatata |
44848551 |
T |
|
| Q |
318 |
aacttacaaatttcaatggcatttctgttgtcttccttttattcaaatgttaagactgctacaggtatgtcgctacctcaagctgttcataataatgggt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44848552 |
aacttacaaatttcaatggcatttctgttgtcttccttttattcaaatgttaagactgctacaggtatgtcgctacctcaagctgttcataataatgggt |
44848651 |
T |
|
| Q |
418 |
gtattggtattttctttctcattactgacctgtgtttttatattttcagtatcgtcatatataggcgtctttggaaccgggctattaggttcccagtttt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44848652 |
gtattggtattttctttctcattactgacctgtgtttttatattttcagtatcgtcatatataggcgtctttggaaccgggctattaggttcccagtttt |
44848751 |
T |
|
| Q |
518 |
tccaacat |
525 |
Q |
| |
|
|||||||| |
|
|
| T |
44848752 |
tccaacat |
44848759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 505
Target Start/End: Original strand, 44861911 - 44862410
Alignment:
| Q |
17 |
caggttattctgacatcattggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgacgggccatattggatgatttcat |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44861911 |
caggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgacgggccatattggttgatttcat |
44862010 |
T |
|
| Q |
117 |
acggctattttcttgccttatcgttgatctacattttatgttttgtgacgtttggctcagtcttcggtaagaatataaccatttaa--ctccgttcttgg |
214 |
Q |
| |
|
| || ||||||||||||||||| |||||||||| || ||||| |||| || ||||||||||| |||||||||||||| |||| | ||| |||||||| |
|
|
| T |
44862011 |
atggatattttcttgccttatctgtgatctacatattgtgtttcgtgatattcggctcagtcttaggtaagaatataactatttcattctctgttcttgg |
44862110 |
T |
|
| Q |
215 |
cattttcccattctgtctgacactgctgacttcattttcaggattaaaattcttcaccttgaatgactacagcatccaattcatattttatttcatctat |
314 |
Q |
| |
|
||||||| | |||||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
44862111 |
cattttctcgttctgtctaatgctgctgatttccttttcaggattaaaattcttcaccttgaatgactacagcatccaattcgtgttttatttcatctat |
44862210 |
T |
|
| Q |
315 |
ataaacttacaaatttcaatggcatttctgttgtcttccttttattcaaatgttaagactgctacaggtatgtcgctacctcaagctgttcataataatg |
414 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| ||||||||| ||| |||| | ||| |||||||||||||| |
|
|
| T |
44862211 |
gtaaacttacaaatttcaacggcatttctgctgtcttcctttttttcaaatgttaagaccgctacaggtttgtttctacttgaagttgttcataataatg |
44862310 |
T |
|
| Q |
415 |
ggtgtattggtattttctt--------tctcattactgacctgtgttttt-atattttcagtatcgtcatatataggcgtctttggaaccgggctattag |
505 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| ||||||||| |||||| ||||| | ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
44862311 |
ggtgtattagtattttcttttctcagatctcattactgacttgtgtttttgatatttgcagtaaccgcatatttagtcgtctttggaaccgggctattag |
44862410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 506
Target Start/End: Original strand, 44836281 - 44836780
Alignment:
| Q |
18 |
aggttattctgacatcattggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgacgggccatattggatgatttcata |
117 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
44836281 |
aggttgttttgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgatgggccatattggatgattacata |
44836380 |
T |
|
| Q |
118 |
cggctattttcttgccttatcgttgatctacattttatgttttgtgacgtttggctcagtcttcggtaagaatataaccatttaactccgt--tcttggc |
215 |
Q |
| |
|
|| ||||||||||||||||| ||| ||||| || |||||||||| || ||||||||||| |||||||||| || |||| |||| | ||||||| |
|
|
| T |
44836381 |
tggttattttcttgccttatcagcgatatacatgttgtgttttgtgatattcggctcagtcttgggtaagaataaaattatttgactctctattcttggc |
44836480 |
T |
|
| Q |
216 |
attttcccattctgtctgacactgctgacttcattttcaggattaaaattcttcaccttgaatgactacagcatccaattcatattttatttcatctata |
315 |
Q |
| |
|
||| ||||| ||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
44836481 |
attctcccactctgtctaatgctgccgacatcattttcaggattaaaattcttcaccttgaatgactacagcatccaatttgtgttctatttcatctata |
44836580 |
T |
|
| Q |
316 |
taaacttacaaatttcaatggcatttctgttgtcttccttttattcaaatgttaagactgctacaggtatgtcgctacctcaagctgttcataataatgg |
415 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||| | ||||||||| ||| ||||||||| ||| |||| | ||| |||| ||| |||||| |
|
|
| T |
44836581 |
taaacttacaaatttcaacggcatttctgctgtcttccttttttgcaaatgttaggaccgctacaggtttgtttctacttgaagttgtttatagtaatgg |
44836680 |
T |
|
| Q |
416 |
gtgtattggtattttctt--------tctcattactgacctgtgttttt-atattttcagtatcgtcatatataggcgtctttggaaccgggctattagg |
506 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| |||||| ||||| | |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
44836681 |
gtgtattggtattttcttttctcagatctcattactgacttgtgtttttgatatttgcagtaaccgcatatataggtgtctttggaactgggctattagg |
44836780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 44879702 - 44880120
Alignment:
| Q |
18 |
aggttattctgacatcattggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgacgggccatattggatgatttcata |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
44879702 |
aggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgacgggccatattggttgattacata |
44879801 |
T |
|
| Q |
118 |
cggctattttcttgccttatcgttgatctacattttatgttttgtgacgtttggctcagtcttcggtaagaatataaccatttaactcc--gttcttggc |
215 |
Q |
| |
|
|| ||||||||||| ||||| |||||| || || |||||||||| ||| |||||| ||| ||||||||| ||||||||| |||| |||||| || |
|
|
| T |
44879802 |
tggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatttaaccatttcactctctgttctttgc |
44879901 |
T |
|
| Q |
216 |
attttcccattctgtctgacactgctgacttcattttcaggattaaaattcttcaccttgaatgactacagcatccaattcatattttatttcatctata |
315 |
Q |
| |
|
|||||| || |||||||| ||||| |||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
44879902 |
attttctcaccctgtctgatgctgctcacttcattttcaggattaaaattcttcagctcgaatgactacaccatccaattcctattttatttcatctatt |
44880001 |
T |
|
| Q |
316 |
taaacttacaaatttcaatggcatttctgttgtcttccttttattcaaatgttaagactgctacaggtatgtcgctacctcaagctgttcataataatgg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||| ||| |||| || || ||||||||||||| | |
|
|
| T |
44880002 |
taaacttacaaatttcaatggcatttctgttgtcttcctttttgtcagatgttaagaccgctgcaggtttgtttctacttccagttgttcataataattg |
44880101 |
T |
|
| Q |
416 |
gtgtattggtattttcttt |
434 |
Q |
| |
|
||| ||| ||||||||||| |
|
|
| T |
44880102 |
gtgcattagtattttcttt |
44880120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 26 - 383
Target Start/End: Original strand, 44897234 - 44897592
Alignment:
| Q |
26 |
ctgacatcattggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgacgggccatattggatgatttcatacggctatt |
125 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |||| || |||| |
|
|
| T |
44897234 |
ctgacatcactgatttatgagaagcaacaaaaattgagaatcatgatgaaaatgcatggtcttggtgatggaccatattggatgattacatatggttatt |
44897333 |
T |
|
| Q |
126 |
ttcttgccttatcgttgatctacattttatgttttgtgacgtttggctcagtcttcggtaagaatataaccatttaactcc--gttcttggcattttccc |
223 |
Q |
| |
|
| ||||||||||| |||||||||| || || ||||||| |||||||||||| | |||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
44897334 |
tccttgccttatcagtgatctacatgttgtgctttgtgatatttggctcagtcctaggtaagaatataaccatt-aactagttgttcttggcattttctt |
44897432 |
T |
|
| Q |
224 |
attctgtctgacactgctgacttcattttcaggattaaaattcttcaccttgaatgactacagcatccaattcatattttatttcatctatataaactta |
323 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
44897433 |
gttctgtctaatgctgctgacttcattttcaggattgaaattcttcaccttgaatgactatagcatccaatttgtgttttattttatctatataaactta |
44897532 |
T |
|
| Q |
324 |
caaatttcaatggcatttctgttgtcttccttttattcaaatgttaagactgctacaggt |
383 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44897533 |
caaatttcagtggcaattctgttggcttcctttttttcaaatgttaagactgctacaggt |
44897592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 248 - 383
Target Start/End: Complemental strand, 12927343 - 12927208
Alignment:
| Q |
248 |
attttcaggattaaaattcttcaccttgaatgactacagcatccaattcatattttatttcatctatataaacttacaaatttcaatggcatttctgttg |
347 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| | ||| |
|
|
| T |
12927343 |
attttcaggattaaaattcttcacaatgaatgactacagcatccaattcgtgttttatttcatctatataaacttacaaatttcgctggcatttttattg |
12927244 |
T |
|
| Q |
348 |
tcttccttttattcaaatgttaagactgctacaggt |
383 |
Q |
| |
|
| || | | ||| ||||||||||| ||||||||| |
|
|
| T |
12927243 |
gcctcgctgttttccaatgttaagacggctacaggt |
12927208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 12927579 - 12927449
Alignment:
| Q |
29 |
acatcattggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgacgggccatattggatgatttcatacggctattttc |
128 |
Q |
| |
|
|||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||| | ||||||| |
|
|
| T |
12927579 |
acatcattagtttacgagaagcaacaaaatttgagaatcatgatgaaaatgcatggtctcggtgatgggccatattggattatttcttacagttattttc |
12927480 |
T |
|
| Q |
129 |
ttgccttatcgttgatctacattttatgttt |
159 |
Q |
| |
|
||||| |||| | |||||||| || ||||| |
|
|
| T |
12927479 |
ttgccatatcaattatctacatgttgtgttt |
12927449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 24031716 - 24031787
Alignment:
| Q |
261 |
aaattcttcaccttgaatgactacagcatccaattcatattttatttcatctatataaacttacaaatttca |
332 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
24031716 |
aaattcttcatcttgaatgactacaacatccaattcatcttttatttcatttatataaacttacaaatttca |
24031787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University