View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_14 (Length: 534)
Name: NF19529_low_14
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 452
Target Start/End: Original strand, 39606863 - 39607294
Alignment:
| Q |
20 |
aagataaaatagcatcatatcagatgtaagtctttgcatgatgctatacaatagtaaaccatctacatctacataagatataaaaacaatagaattatta |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
39606863 |
aagataaaatagcatcatatcagatgtaagtctttgcatgatgttatacaatagtaaaccatctgcatctgcataagatataaaaacaatagaattatta |
39606962 |
T |
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| Q |
120 |
aatacaatcaagnnnnnnntagttattgttcnnnnnnnnnnnngacaaaagtaattattctttttataaatcatatgcatagtgaattacaatgaacaaa |
219 |
Q |
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|||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
39606963 |
aatacaatcaagaaaaaaatagttattgttctttttttttt--gacaaaagttattattctttttataaatcacatgcatagtgaattacaatgaacgat |
39607060 |
T |
|
| Q |
220 |
tcaattaatagagtagtttccttnnnnnnnnt---agttgttatattaaattttaaattactggttgagaaattaaaatatgaannnnnnnnnncccata |
316 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39607061 |
tcaattaatagagtagtttccttaaaaaaaaatagagttgttatattaaattttaaattactggttgagaaattaaaatatga-ttttttttttcccata |
39607159 |
T |
|
| Q |
317 |
agtttattccactaaaactataaaggtaaattatttttaagttgttttataggtgtgaatgtgggaagagactttatggaaagagcttgtgattttttga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39607160 |
agtttattccactaaaactataaaggtaaattatttttaagttgttttatag-tgtgaatgtgggaagagattttatggaaagagcttgtgattttttga |
39607258 |
T |
|
| Q |
417 |
attgtttgagagaactatcccttttaattatttggg |
452 |
Q |
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| T |
39607259 |
attgtttgagagaactatcccttttaattatttggg |
39607294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 355 - 516
Target Start/End: Original strand, 39610091 - 39610248
Alignment:
| Q |
355 |
aagttgttttataggtgtgaatgtgggaagagactttatggaaagagcttgtgattttttgaattgtttgagagaactatcccttttaattattt-gggt |
453 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||| || |||||||||||||||||||||| |||| |
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| T |
39610091 |
aagttgttttataggtgtgaatgtgggaagggactttaaggaaggcgcttgtgattttttgaattgtttaagggaactatcccttttaattatttggggt |
39610190 |
T |
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| Q |
454 |
tacctctggggagcaaattcaaggtaaattatcaacttaattaggagcatttgttggaaactt |
516 |
Q |
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| T |
39610191 |
tacctgtggggagcaaatccaagg-aagctatcaac----ttaggagcctttgttggaaactt |
39610248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 39617388 - 39617331
Alignment:
| Q |
20 |
aagataaaatagcatcatatcagatgtaagtctttgcatgatgctatacaatagtaaa |
77 |
Q |
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|||||||||||||||||||| | ||||||||| |||||||||| ||||||| |||||| |
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| T |
39617388 |
aagataaaatagcatcatataaaatgtaagtcattgcatgatgttatacaacagtaaa |
39617331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 444
Target Start/End: Complemental strand, 26476270 - 26476180
Alignment:
| Q |
355 |
aagttgttttataggtgtgaatgtgggaagagactttatggaaagagcttgtgattttttgaattgtt-tgagagaactatcccttttaat |
444 |
Q |
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||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||| |||| || |||||||||||||| |
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| T |
26476270 |
aagttgtttgataggtgtgaatgtgggtagaaattttatggatagagcttgtgattttttgaattgttatgagggagctatcccttttaat |
26476180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 36219382 - 36219438
Alignment:
| Q |
357 |
gttgttttataggtgtgaatgtgggaagagactttatggaaagagcttgtgattttt |
413 |
Q |
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||||||| |||||||||||||||||||| | ||||| |||||||||||||| |||| |
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| T |
36219382 |
gttgtttgataggtgtgaatgtgggaagggtgtttattgaaagagcttgtgactttt |
36219438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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