View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19529_low_18 (Length: 439)
Name: NF19529_low_18
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 422
Target Start/End: Original strand, 549303 - 549713
Alignment:
| Q |
12 |
aagaacagggtcaggaaaatcttttaccttaaaagaaacatttgaatctggaatgtcaaatgtttttgttgtgtccatgaactcagaggaaacactctca |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
549303 |
aagaacagggtcaggaaaatcatttaccttaaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccatgaactcaaaggaaacactctca |
549402 |
T |
|
| Q |
112 |
tctagtttgggaagattaagacagaattgaagtgatataactgatgaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
549403 |
tctagtttgggaagattaagacagaattgaagtgatataactgatgaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacat |
549502 |
T |
|
| Q |
212 |
cgcttgagaaaagatcaaaaaccaaaccaacaaagtttgtttttgaacaagttaccattttgttaacttcttgatgcaaatagggcatagagtgtttaac |
311 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
549503 |
cacttgagaaaagatcaaaaaccaaaccaacaaagtttgtttttgaacaagttacgattttgttaacttcttgatgcaaatagggtatagagtgtttaac |
549602 |
T |
|
| Q |
312 |
tgtgagtttcatttgtgttgcgatgtgaatgttgggaggaaggtcttggatattgatctgaggaaggaatgtaaaatcaatgtttggtggaagagagttt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
549603 |
tgtgagtttcatttgtgttgcgatgtgaatgttgggaggaaggtcttggatattgatctgaggaaggaatgtaaaatcaatgtttggtggaagagagttt |
549702 |
T |
|
| Q |
412 |
aagatagattt |
422 |
Q |
| |
|
||||||||||| |
|
|
| T |
549703 |
aagatagattt |
549713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 422
Target Start/End: Complemental strand, 23423325 - 23422915
Alignment:
| Q |
12 |
aagaacagggtcaggaaaatcttttaccttaaaagaaacatttgaatctggaatgtcaaatgtttttgttgtgtccatgaactcagaggaaacactctca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23423325 |
aagaacagggtcaggaaaatcttttaccttaaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccatgaactcaaaggaaacactctca |
23423226 |
T |
|
| Q |
112 |
tctagtttgggaagattaagacagaattgaagtgatataactgatgaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23423225 |
tctagtttgggaagattaagacagaattgaagtgatataactgatgaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacat |
23423126 |
T |
|
| Q |
212 |
cgcttgagaaaagatcaaaaaccaaaccaacaaagtttgtttttgaacaagttaccattttgttaacttcttgatgcaaatagggcatagagtgtttaac |
311 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23423125 |
cgcttgagaaaagatcaaaaaccaaacaaacaaagtttgtttttgaacaagttaccattttgttaacttcttgatgcaaatagggtatagagtgtttaac |
23423026 |
T |
|
| Q |
312 |
tgtgagtttcatttgtgttgcgatgtgaatgttgggaggaaggtcttggatattgatctgaggaaggaatgtaaaatcaatgtttggtggaagagagttt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23423025 |
tgtgagtttcatttgtgttgcgatgtgaatgttgggaggaaggtcctggatattgatatgaggaaggaatgtaaaatcaatgtttggtggaagagagttt |
23422926 |
T |
|
| Q |
412 |
aagatagattt |
422 |
Q |
| |
|
||||| ||||| |
|
|
| T |
23422925 |
aagatggattt |
23422915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University