View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_19 (Length: 432)
Name: NF19529_low_19
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 3567739 - 3568132
Alignment:
| Q |
19 |
tcttatttattctttatgaatttttatgtgttctatataaaacacttattttctaatgagtcaagtggcgaaatttacacgcagttagtgctaagaagtg |
118 |
Q |
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| T |
3567739 |
tcttatttattctttatgaatttttatgtgttctatataaaacacttattttctaatgagtcaagtggcgaaatttacacgcagttagtgctgagaagtg |
3567838 |
T |
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| Q |
119 |
gagaattgcatattcaa-tcnnnnnnngagggaattgcatattcaatctattaacttatataatatagtttagtttgtttaatatatattgtagatgatg |
217 |
Q |
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| T |
3567839 |
gagaattgcatattcaatttttttttttagggaattgcatattcaatctattaacttatataatatagtttagtttgtttaatatatattgtagatgatt |
3567938 |
T |
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| Q |
218 |
accaagtcaatacttaatatatgcacatagtatattnnnnnnnnnnnnnnnnnnnnntatggcaggggttaatagaatttacccctaacatatcaaatgt |
317 |
Q |
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| T |
3567939 |
accaagtcaatacttaatatatgcacataatatattaaacaaaaataaactaaaaaatatggtaggggttaatagaattt-----------atcaaatgt |
3568027 |
T |
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| Q |
318 |
atatacattcttttacaatttgagttgcaattaattactataacttttgcttcttgtttatttgcagtgaaatgggaaatgctgcctattgaactagtgc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3568028 |
atatacattcttttacaatttgagttgcaattaattactataacttttgcttcttgtttatttgcagtgaaatgggaaatgctgcctattgaactagtac |
3568127 |
T |
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