View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_2 (Length: 707)
Name: NF19529_low_2
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 18 - 595
Target Start/End: Complemental strand, 43173323 - 43172743
Alignment:
| Q |
18 |
accaaacccctcaccgtccgatgaagcctcaatgacctgaccgtagtctttgaacgtcgccggagttgcttcgattactttcaacttcaccaccttcaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| |
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| T |
43173323 |
accaaacccctcaccgtccgatgaagcctcaatgacctgaccgtagtctttgaacgtcgccggagttgcttcgattgccttcaccttcaccaccttcaca |
43173224 |
T |
|
| Q |
118 |
ctctccattcccgatcagattacgtacgtggtggagcttcaacaaaacaaaaatctctttctgccacgtacgtacgtatatcaagtgttgttatttttgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43173223 |
ctctccattcccgatcagattacgtacgtggtggagcttcaacaaaacaaaaatctctttctgccacgtacgta----tatcaagtgttgttatttttgg |
43173128 |
T |
|
| Q |
218 |
tcaaggtagtaaatttctaactagagttggacattttcgtatttttaaaatttatgtcttaaaaaatcaaaatca------gaatccttctcttcaa-ca |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
43173127 |
tcaaggtagtaaatttctaactagagttggacattttcgtatttttaaaatttatgtcttaaaaaatcaaaatcaaaatcagaatccttctcttcaagca |
43173028 |
T |
|
| Q |
311 |
aaaaccccccgaaacctaaaacagtgaacaaagcagaaagatgatgaacactaacaccgtcgccggcggcagtggtggtggtggcggagacgtcagagga |
410 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43173027 |
aaaaccccccgaaacctaaaacagtgaacaaagcggaaagatgatgaacactaacaccgtcgccggcggcagtggtggtggtggcggagacggcagagga |
43172928 |
T |
|
| Q |
411 |
aatgaacgacaacttatacgaacaataaccacaatactaaccaaaaacgaaaacccacagaatcttcaacaattcatcccacacttaacactcccaatca |
510 |
Q |
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| T |
43172927 |
aaagaacgacaacttatacgtacaataaccacaatactaaccaaaaacgaaaacccacagaatcttcaacaattcatcccacacttaacactcccaatca |
43172828 |
T |
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| Q |
511 |
taatctcaattctttcatacaaacctcttcactctcaaccagaaaccctactttccttcttcaaatggtttcaatccaacgcaca |
595 |
Q |
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| T |
43172827 |
taatctcaattctttcatacaaacctcttcactctcaaccagaaaccctactttccttcttcaaatggtttcaatccaacgcaca |
43172743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 43176072 - 43175985
Alignment:
| Q |
39 |
tgaagcctcaatgacctgaccgtagtctttgaacgtcgccggagttgcttcgattactttcaacttcaccaccttcacactctccatt |
126 |
Q |
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||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| | || | ||||||||||||| ||||||||| |
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| T |
43176072 |
tgaagcctcgatgacctgaccatagtctttgaagttcgccggagttgcttcgatcgccttaattgtcaccaccttcacgctctccatt |
43175985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 340 - 589
Target Start/End: Complemental strand, 51298208 - 51297956
Alignment:
| Q |
340 |
aaagcagaaagatgatgaacactaacaccgtcgccggcggcagtggtggtggtggcggagacgtcagaggaaatgaacgacaacttatacgaacaataac |
439 |
Q |
| |
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|||||| ||| ||| ||||||| ||||||| || ||||| ||||| |||||| |||||||| | ||||||| |||| |||||| |||| ||||||||| |
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| T |
51298208 |
aaagcataaacatggtgaacacgaacaccg---ccagcggcggtggtagtggtgtcggagacggcggaggaaaagaacaacaactgatacaaacaataac |
51298112 |
T |
|
| Q |
440 |
cacaatactaac------caaaaacgaaaacccacagaatcttcaacaattcatcccacacttaacactcccaatcataatctcaattctttcatacaaa |
533 |
Q |
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|||| || |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51298111 |
cacagtattaacaaaaaccaaaaacgaaaacccacagaatcttcaacaattcattccacacttaacactcccaatcataatctcaatcctttcatacaaa |
51298012 |
T |
|
| Q |
534 |
cctcttcactctcaaccagaaaccctactttccttcttcaaatggtttcaatccaa |
589 |
Q |
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|||||||||| ||||||| |||||||| ||||||||||||||||||| ||| |||| |
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| T |
51298011 |
cctcttcactgtcaaccaaaaaccctagtttccttcttcaaatggttccaaaccaa |
51297956 |
T |
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