View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_21 (Length: 396)
Name: NF19529_low_21
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 24813281 - 24813649
Alignment:
| Q |
11 |
taatactcctacaacaatttcaactatatgtaagatttgatgactcttccataatctcacttacaaaaatatcaaatcttaacaaacaaataaataatag |
110 |
Q |
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| T |
24813281 |
taatactcctacaacaatttcaactatatgtaagatttgatgactcttccataatctcacttacaaaaatatcaaatcttaacaaacaaataaatgatag |
24813380 |
T |
|
| Q |
111 |
atactatgaatctttatgatgtgtgaggcacttaagaaaaatagtgataatgaaaataaccttatggttttgctgatgaagtaacatacacaaaaattaa |
210 |
Q |
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| T |
24813381 |
atactatgaatctttatgatgtgtgaggcacttaagaaaaatagtgataatgaaaataaccttatggttttgctgatgaagtaacatacacaaaaattaa |
24813480 |
T |
|
| Q |
211 |
gaactttgtgtgtatattccttataagcttataggttgatttgaa-gagaaggagattgaagtatcttccttgtaatgattttgttataatctgaatatt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24813481 |
gaactttgtgtgtatattccttataagcttataggttgatttgaatgagaaggagattgaagtatcttccttgtaatgattttgttataatctgaatatt |
24813580 |
T |
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| Q |
310 |
taaggaaaatggtgtcttaaactggtccaaaatagcacttttttggtgtgcatttttatatttgaagtg |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24813581 |
taaggaaaatggtgtcttaaactggtccaaaatagcacttttttggtgtgcatttttatatttgaagtg |
24813649 |
T |
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