View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_24 (Length: 372)
Name: NF19529_low_24
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 44 - 358
Target Start/End: Original strand, 14202108 - 14202421
Alignment:
| Q |
44 |
caaaacgagtgattgttggacgaataagttctttatcatcagtatagtatatttcaacatcaaactcagtgtccaaatatggttgtatataaacaaagtc |
143 |
Q |
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| T |
14202108 |
caaaatgagtgattgttggacgaataagttctttatcatcagtatagtatatttcaacatcaaactcagtgtccaaatatggttgtatataaacaaagtc |
14202207 |
T |
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| Q |
144 |
accnnnnnnngcttcctctagcactttttggacgtttgaatttttcttaatatcttctaaatacaaattcaaacaatgagctacacatggggaaatacta |
243 |
Q |
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| T |
14202208 |
acctttttt-gcttcctctagcactttttggacgtttgaatttttcttaatatcttctaaatacaaattcaaacaatgagctacacatggggaaatacta |
14202306 |
T |
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| Q |
244 |
tatactatttctttataaataattgagttacatttaaaaggtgtgcatgcatctttaataataacctagaatatatgtttcatacatgatcaaaagttaa |
343 |
Q |
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| T |
14202307 |
tatactatttctttataaataattgagttacatttaaaaggtgtgcatgcatctttaataataacctagaatatatgtttcatacatgatcaaaagttaa |
14202406 |
T |
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| Q |
344 |
aagacatgaaaaatt |
358 |
Q |
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|||| |||||||||| |
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| T |
14202407 |
aagatatgaaaaatt |
14202421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 14202046 - 14202089
Alignment:
| Q |
3 |
gaacctgtaatataaaacttcaatttatttaacaattgattcaa |
46 |
Q |
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| T |
14202046 |
gaacctgtaatataaaacttcaatttatttaacaattgattcaa |
14202089 |
T |
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