View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_27 (Length: 364)
Name: NF19529_low_27
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 40993674 - 40994012
Alignment:
| Q |
18 |
gaatgaatggtggtagagctagtgaaagatgataatgtctactaaatcatcaaatccaataacttctagtatatatgattctcaaaattgtatagttgac |
117 |
Q |
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| T |
40993674 |
gaatgaatggtggtagagctagtgaaagatgataatgtctactaaatcatcaaatccaataacttctagtatatatgattctcaaaattgcatagttgac |
40993773 |
T |
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| Q |
118 |
tcgattgaataatgtggatctaaaagcaaaaatatatatacaaggaaccaataaatgtatacattatatgatgggaaattattattaccttcaatacata |
217 |
Q |
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| T |
40993774 |
tcgattgaataatgtggatctaaaagcaaaaatatatatacaaggaaccaataaatgtatacattatatgatgggaaattattataaccttcaatacata |
40993873 |
T |
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| Q |
218 |
ttccatcttaaccaattagcactttgttaattagggataattttaccactcg--tattccaatttgatttgaggaattaatcccctagtttttcacgaag |
315 |
Q |
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| T |
40993874 |
ttccatcttaaccaattagcactttgttaattagggataattttaccactcgtatattccaatttgatttgaggaattaatcccctagtttttcacgaag |
40993973 |
T |
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| Q |
316 |
ataattaagcggcttattccaaagaattccctagtataa |
354 |
Q |
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| T |
40993974 |
ataattaagcggcttattccaaagaattccctagtataa |
40994012 |
T |
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