View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19529_low_28 (Length: 364)
Name: NF19529_low_28
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 48182782 - 48182570
Alignment:
| Q |
1 |
tctcattgtagaccattgtgaatccctgcaactcaaagtggcatgagactgttaagaaaatattttgaaatgatattttgtatatatatgccgacaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48182782 |
tctcattgtagaccattgtgaatccctgcaactcaaagtggcatgagactgttaagaaaatattttgaaatgatattttgtatatatatgccgacaaata |
48182683 |
T |
|
| Q |
101 |
atgtaaccttgtagagaacatatatgattatgacttttgagttttttgccacttaaaaaaggtaaagtgatattcaacttagtggctgcaccactgagaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48182682 |
atgtaaccttatagagaacatatatgattatgacttttgagttttttgccacttaaaaaaggtaaagtgatattcaacttagtggctgcaccactgagaa |
48182583 |
T |
|
| Q |
201 |
tctatgtgcatat |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
48182582 |
tctatgtgcatat |
48182570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 198 - 348
Target Start/End: Complemental strand, 48182557 - 48182407
Alignment:
| Q |
198 |
gaatctatgtgcatataaatttgattttactatccatgcaatagttgaaataacataatactgctttccaatttgagtaccggctgaagaagagaccctt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48182557 |
gaatctatgtgcatataaatttgattttactatccatgcaatagttgaaataacataatactgctttccaatttgagtaccggctgaagaagagaccctt |
48182458 |
T |
|
| Q |
298 |
ttggtgaagtggagaagctttaataggagagggagtgcttctgtttggaat |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48182457 |
ttggtgaagtggagaagctttaataggagagggagtgcttctgtttggaat |
48182407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 4091563 - 4091630
Alignment:
| Q |
282 |
tgaagaagagacccttttggtgaagtggagaagctttaataggagagggagtgcttctgtttggaatt |
349 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
4091563 |
tgaagaatagacctttttggtgaagaggagaagcagagataggagaaggaatgcttctgtttggaatt |
4091630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University