View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19529_low_3 (Length: 695)

Name: NF19529_low_3
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19529_low_3
NF19529_low_3
[»] chr3 (9 HSPs)
chr3 (526-659)||(5187259-5187392)
chr3 (210-395)||(5241549-5241731)
chr3 (323-474)||(5187057-5187207)
chr3 (206-401)||(5242081-5242268)
chr3 (207-395)||(5186029-5186208)
chr3 (17-98)||(5186582-5186663)
chr3 (206-267)||(5186992-5187052)
chr3 (654-692)||(5187988-5188026)
chr3 (21-77)||(5241950-5242006)
[»] chr5 (2 HSPs)
chr5 (527-649)||(37803045-37803167)
chr5 (527-649)||(37626505-37626627)
[»] chr8 (2 HSPs)
chr8 (543-649)||(29823535-29823642)
chr8 (604-654)||(7093328-7093379)
[»] chr1 (4 HSPs)
chr1 (527-649)||(41313045-41313167)
chr1 (527-578)||(25218324-25218375)
chr1 (604-648)||(20448341-20448386)
chr1 (604-648)||(20534108-20534153)
[»] scaffold2006 (1 HSPs)
scaffold2006 (527-649)||(848-970)
[»] chr2 (1 HSPs)
chr2 (527-649)||(19216413-19216534)
[»] chr7 (3 HSPs)
chr7 (562-654)||(1607963-1608056)
chr7 (527-652)||(2188763-2188888)
chr7 (562-654)||(20536578-20536671)
[»] scaffold0060 (1 HSPs)
scaffold0060 (562-654)||(17294-17387)
[»] chr6 (1 HSPs)
chr6 (615-659)||(30749722-30749766)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 526 - 659
Target Start/End: Original strand, 5187259 - 5187392
Alignment:
Q  526 gagtttctctttgaattttcataatagtaaattagaattgttttacttcaaaatacaaaattcttaagaacatagtcattggcctttcactacccaaaac 625  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  5187259 gagtttctctttgaattttcaaaatagtaaattagaatcgttttacttcaaaatacaaaattcctaagaacatagtcactggcctttcactacccaaaac 5187358  T
Q  626 acaccctagctggtcttaactttgaacgcatgtg 659  Q
    |||||||||||| |||||||||||||||||||||    
T  5187359 acaccctagctgatcttaactttgaacgcatgtg 5187392  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 210 - 395
Target Start/End: Complemental strand, 5241731 - 5241549
Alignment:
Q  210 tattccatataaaaggttgttgctaaatcttgggaaaaaatggcgggttttataatttgccaaatatggttaagaaccattgtggcacaagaaacataac 309  Q
    ||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||||| |||||||| || |||| |  |||| |    
T  5241731 tattccatataaaaggttgttgctaaatct--ggaaaaaatggagggttttataatttgtcaaatatggttaa-aaccattgggg-acaaaacgcatacc 5241636  T
Q  310 attagctttgtcagttttgtacaaaacaccaccattcgtgtgtttaggttgt-caagttagacaaaattctatgaaagtacaaaaag 395  Q
    ||||| |||||||||||||| |||||||||| |||||||| ||||| ||||| |||||||||||||||| ||||||||||| |||||    
T  5241635 attagttttgtcagttttgttcaaaacaccaacattcgtgggtttatgttgtccaagttagacaaaattttatgaaagtacgaaaag 5241549  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 323 - 474
Target Start/End: Original strand, 5187057 - 5187207
Alignment:
Q  323 gttttgtacaaaacaccaccattcgtgtgtttaggttgtc-aagttagacaaaattctatgaaagtacaaaaagagcatgtaaatgatctgaatttttga 421  Q
    ||||||||||||||||||  ||| ||| |||||||||||| || |||||||||||| ||||||||||||||||| | ||||||  |||  ||||||||||    
T  5187057 gttttgtacaaaacaccaaaatttgtgggtttaggttgtccaacttagacaaaattttatgaaagtacaaaaagggtatgtaac-gattcgaatttttga 5187155  T
Q  422 gacattaacttgtgtaattcttagcagaaaaaaggtgaatatttttgtttttc 474  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  5187156 gacattaacttgtgtaattcttagc-ggaaaaaggtgaatatttttgtttttc 5187207  T

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Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 206 - 401
Target Start/End: Original strand, 5242081 - 5242268
Alignment:
Q  206 attgtattccatataaaaggttgttgctaaatcttgggaaaaaatggcgggttttataatttgccaaatatggttaagaaccattgtggcacaagaaaca 305  Q
    |||||||||||||||||||||| ||||||||  | ||  |||||| | |||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  5242081 attgtattccatataaaaggtttttgctaaaaatggg--aaaaatagagggttttataatttgccaaatatggttaagaaccattgtggcacaaaaagca 5242178  T
Q  306 taacattagctttgtcagttttgtacaaaacaccaccattcgt--gtgtttaggttgt-caagttagacaaaattctatgaaagtacaaaaagagcatg 401  Q
    |||||||         |||||||| |||||||||| |||| ||  | ||||||||| | |||||||||||||||| ||||||||||||||||| |||||    
T  5242179 taacatt---------agttttgttcaaaacaccaacatttgtgggggtttaggttctccaagttagacaaaattttatgaaagtacaaaaagggcatg 5242268  T

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Target: chr3; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 207 - 395
Target Start/End: Complemental strand, 5186208 - 5186029
Alignment:
Q  207 ttgtattccatataaaa-ggttgttgctaaatcttgggaaaaaatggcgggttttataatttgccaaatatggttaagaaccattgtggcacaagaaaca 305  Q
    ||||||||||||||||| |||||||||||||||| ||  ||||| || |||||||||||||||||||||||||||||||||||||||   |||| |  ||    
T  5186208 ttgtattccatataaaaaggttgttgctaaatctagg--aaaaagggagggttttataatttgccaaatatggttaagaaccattgttagacaaaacgca 5186111  T
Q  306 taacattagctttgtcagttttgtacaaaacaccaccattcgtgtgtttaggttg-tcaagttagacaaaattctatgaaagtacaaaaag 395  Q
    || ||||         |||||||| ||||| |||| |||||||| |||||||||| ||||||||| ||||||||||||||||||| |||||    
T  5186110 tatcatt---------agttttgttcaaaataccaacattcgtgagtttaggttgttcaagttaggcaaaattctatgaaagtacgaaaag 5186029  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 5186582 - 5186663
Alignment:
Q  17 ctgtgttactctatataactttttagcaaatggatttgatggttgaaacctaatcaaaatgaagcgacatgttgattcaaaa 98  Q
    |||||||||| | ||||||||||||| |||||| |||  | |||| ||||||||||||||||||||||||||||||||||||    
T  5186582 ctgtgttactatttataactttttaggaaatggctttctttgttgcaacctaatcaaaatgaagcgacatgttgattcaaaa 5186663  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 5186992 - 5187052
Alignment:
Q  206 attgtattccatataaaaggttgttgctaaatcttgggaaaaaatggcgggttttataattt 267  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  5186992 attgtattccatataaaaggttgtagctaaatc-tgggaaaaaatggagggttttataattt 5187052  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 692
Target Start/End: Original strand, 5187988 - 5188026
Alignment:
Q  654 catgtgtgtccaaataactcttcatttgctactaatatt 692  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5187988 catgtgtgtccaaaaaactcttcatttgctactaatatt 5188026  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 5242006 - 5241950
Alignment:
Q  21 gttactctatataactttttagcaaatggatttgatggttgaaacctaatcaaaatg 77  Q
    |||||| | ||||| |||||||||||||  ||||||||||| |||||||||||||||    
T  5242006 gttactatttataagtttttagcaaatgactttgatggttgcaacctaatcaaaatg 5241950  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 527 - 649
Target Start/End: Original strand, 37803045 - 37803167
Alignment:
Q  527 agtttctctttgaattttcataatagtaaattagaattgttttacttcaaaatacaaaattcttaagaacatagtcatt-ggcctttcactacccaaa-a 624  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||| |||||||| ||||||| ||| |||| || | ||  ||||||||||||||||| |    
T  37803045 agtttctctt-gaattttcagaatagtaaattagagttgttttacatcaaaatataaaattcctaacaaca-aggctttccgcctttcactacccaaaga 37803142  T
Q  625 cacaccctagctggtcttaactttg 649  Q
    |||| ||||||||||| ||||||||    
T  37803143 cacatcctagctggtcataactttg 37803167  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 527 - 649
Target Start/End: Original strand, 37626505 - 37626627
Alignment:
Q  527 agtttctctttgaattttcataatagtaaattagaattgttttacttcaaaatacaaaattcttaagaacatagtcatt-ggcctttcactacccaaa-a 624  Q
    |||||||||| ||||||||| |||||||||| ||| ||||||||| |||||||| ||||||| ||| |||| || | ||  ||||||||||||| ||| |    
T  37626505 agtttctctt-gaattttcagaatagtaaatcagagttgttttacatcaaaatataaaattcctaacaaca-aggctttccgcctttcactacctaaaga 37626602  T
Q  625 cacaccctagctggtcttaactttg 649  Q
    |||| ||||||||||| ||||||||    
T  37626603 cacatcctagctggtcataactttg 37626627  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 543 - 649
Target Start/End: Complemental strand, 29823642 - 29823535
Alignment:
Q  543 ttcataatagtaaattagaattgttttacttcaaaatacaaaattcttaagaacatagtcattggcctttcactacccaaa-acacaccctagctggtct 641  Q
    |||| |||||||||| ||| ||||||||| |||||||| ||||||| |||||||| ||   |  ||||||||||||||||| |||||||||||||||||     
T  29823642 ttcagaatagtaaatcagagttgttttacatcaaaatataaaattcctaagaacaaagctttccgcctttcactacccaaagacacaccctagctggtca 29823543  T
Q  642 taactttg 649  Q
    ||||||||    
T  29823542 taactttg 29823535  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 654
Target Start/End: Original strand, 7093328 - 7093379
Alignment:
Q  604 ttggcctttcactacccaaa-acacaccctagctggtcttaactttgaacgc 654  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||||| ||||    
T  7093328 ttggcctttaactacccaaagacacaccctagctggtcataactttggacgc 7093379  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 527 - 649
Target Start/End: Original strand, 41313045 - 41313167
Alignment:
Q  527 agtttctctttgaattttcataatagtaaattagaattgttttacttcaaaatacaaaattcttaagaacatagtcatt-ggcctttcactacccaaa-a 624  Q
    |||||||||| ||||||||| |||||||||| ||| ||||||||| |||||||| ||||||| |||||||| || | ||  ||||||||||||||||| |    
T  41313045 agtttctctt-gaattttcagaatagtaaatcagagttgttttacatcaaaatataaaattcctaagaaca-aggctttccgcctttcactacccaaaga 41313142  T
Q  625 cacaccctagctggtcttaactttg 649  Q
    |||| ||||| ||||| ||||||||    
T  41313143 cacatcctagttggtcataactttg 41313167  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 527 - 578
Target Start/End: Complemental strand, 25218375 - 25218324
Alignment:
Q  527 agtttctctttgaattttcataatagtaaattagaattgttttacttcaaaa 578  Q
    |||||||||||||||||||| |||||||||||||| |||| |||| ||||||    
T  25218375 agtttctctttgaattttcaaaatagtaaattagagttgtcttacatcaaaa 25218324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 648
Target Start/End: Complemental strand, 20448386 - 20448341
Alignment:
Q  604 ttggcctttcactacccaaa-acacaccctagctggtcttaacttt 648  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||||    
T  20448386 ttggcctttaactacccaaagacacaccctagctggtcataacttt 20448341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 648
Target Start/End: Complemental strand, 20534153 - 20534108
Alignment:
Q  604 ttggcctttcactacccaaa-acacaccctagctggtcttaacttt 648  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||||    
T  20534153 ttggcctttaactacccaaagacacaccctagctggtcataacttt 20534108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2006 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold2006
Description:

Target: scaffold2006; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 527 - 649
Target Start/End: Original strand, 848 - 970
Alignment:
Q  527 agtttctctttgaattttcataatagtaaattagaattgttttacttcaaaatacaaaattcttaagaacatagtcatt-ggcctttcactacccaaa-a 624  Q
    |||||||||| ||||||||| |||||||||| ||| ||||||||| |||||||| ||||||| ||| |||| || | ||  ||||||||||||| ||| |    
T  848 agtttctctt-gaattttcagaatagtaaataagagttgttttacatcaaaatataaaattcctaacaaca-aggctttccgcctttcactaccaaaaga 945  T
Q  625 cacaccctagctggtcttaactttg 649  Q
    |||| ||||||||||| ||||||||    
T  946 cacatcctagctggtcataactttg 970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 527 - 649
Target Start/End: Complemental strand, 19216534 - 19216413
Alignment:
Q  527 agtttctctttgaattttcataatagtaaattagaattgttttacttcaaaatacaaaattcttaagaacatagtcatt-ggcctttcactacccaaa-a 624  Q
    |||||||||| ||||||||| |||||||||| ||| ||||||||| |||||||| ||||||| |||||||| || | ||  ||||||||||||||||| |    
T  19216534 agtttctctt-gaattttcagaatagtaaatcagagttgttttacatcaaaatataaaattc-taagaaca-aggctttccgcctttcactacccaaaga 19216438  T
Q  625 cacaccctagctggtcttaactttg 649  Q
    |||| |||| |||||| ||||||||    
T  19216437 cacatcctaactggtcataactttg 19216413  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 562 - 654
Target Start/End: Original strand, 1607963 - 1608056
Alignment:
Q  562 attgttttacttcaaaatacaaaattcttaagaacatagtcattggcctttcactacccaaa-acacaccctagctggtcttaactttgaacgc 654  Q
    |||||||||| |||||||| | |||||||||||  |  | | ||||||||| |||||||||| ||||||||||||||||| |||||||| ||||    
T  1607963 attgttttacatcaaaatatataattcttaagagtaaggcccttggcctttaactacccaaagacacaccctagctggtcataactttggacgc 1608056  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 527 - 652
Target Start/End: Complemental strand, 2188888 - 2188763
Alignment:
Q  527 agtttctctttgaattttcataatagtaaattagaattgttttacttcaaaatacaaaattcttaagaacatagtcatt-ggcctttcactacccaa-aa 624  Q
    |||||||||| ||||||||| ||||| |||| | | ||||||||| |||||||| ||||||| |||||||| || | ||  ||||||||||||||||  |    
T  2188888 agtttctctt-gaattttcagaataggaaatcaaagttgttttacatcaaaatataaaattcctaagaaca-aggctttccgcctttcactacccaacga 2188791  T
Q  625 cacaccctagctggtcttaactttgaac 652  Q
    |||  ||||||||||| |||||||||||    
T  2188790 cacttcctagctggtcataactttgaac 2188763  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 654
Target Start/End: Original strand, 20536578 - 20536671
Alignment:
Q  562 attgttttacttcaaaatacaaaattcttaagaacatagtcattggcctttcactacccaaa-acacaccctagctggtcttaactttgaacgc 654  Q
    ||||||| || |||||||| | |||||||||||  |  | | ||||||||| |||||||||| ||||||||||| ||||| |||||||| ||||    
T  20536578 attgtttaacatcaaaatatacaattcttaagagtaaggcccttggcctttaactacccaaagacacaccctagttggtcataactttggacgc 20536671  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 654
Target Start/End: Complemental strand, 17387 - 17294
Alignment:
Q  562 attgttttacttcaaaatacaaaattcttaagaacatagtcattggcctttcactacccaaa-acacaccctagctggtcttaactttgaacgc 654  Q
    |||||||||| |||||||| | |||||||||||  |  | | ||||||||| |||||||||| |||||||||| |||||| ||| |||| ||||    
T  17387 attgttttacatcaaaatatataattcttaagagtaaggcccttggcctttaactacccaaagacacaccctaactggtcataattttggacgc 17294  T

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Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 615 - 659
Target Start/End: Original strand, 30749722 - 30749766
Alignment:
Q  615 ctacccaaaacacaccctagctggtcttaactttgaacgcatgtg 659  Q
    |||||||||||||||||||| || || ||||||||||||| ||||    
T  30749722 ctacccaaaacacaccctagatgatcataactttgaacgcttgtg 30749766  T

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