View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_30 (Length: 355)
Name: NF19529_low_30
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_30 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 45478840 - 45479185
Alignment:
| Q |
10 |
tgagatgaagcagctgatgtgtcaaaggattcctttctgactaaaagacaagtgattcttgaaggattggaattagtattactggaatgaatgttgttat |
109 |
Q |
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| T |
45478840 |
tgagatgaagcagctgatgtgtcaaaggattcttttctgactaaaagacaagtgattcttgaaggattggaattagtattactggaatgagtgttgttat |
45478939 |
T |
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| Q |
110 |
caagactacagatcacaaaatcagggcggtgaagcgcgagatgcagccgatcctttccaactacataagcagatgcatcaagcagcacatgccaattgtt |
209 |
Q |
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| T |
45478940 |
caagactacagatcacaaaatcagggcggtgaagcgcgagatgcagccgatcctttccaactacataagcagatgcatcaagcagcacatgccaattgtt |
45479039 |
T |
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| Q |
210 |
cctgtgagcctctgagatccaatgcattgttccactagcatctgctggataagagaataagccttttggactgattttacacctcctcctaaagttttta |
309 |
Q |
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| T |
45479040 |
cctgtgagcctctgagatccaatgcattgttccactagcatctgctggataagagaataagccttttggactgattttacacctcctcctaaagttttga |
45479139 |
T |
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| Q |
310 |
cttaactgagaccctttaatcctcaagtcctaccaagtctttggtg |
355 |
Q |
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| T |
45479140 |
cttaactgagaccctttaatcctcaagtccaaccaagtctttggtg |
45479185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 335
Target Start/End: Original strand, 42654790 - 42654947
Alignment:
| Q |
178 |
gcagatgcatcaagcagcacatgccaattgttcctgtgagcctctgagatccaatgcattgttccactagcatctgctggataagagaataagccttttg |
277 |
Q |
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| T |
42654790 |
gcagatgcatcaagcaaaacatgccaatagttcctatgagcctcagaaacccaatgcattgtcccattcacatctgccacataagcaaatagcccttttg |
42654889 |
T |
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| Q |
278 |
gactgattttacacctcctcctaaagtttttacttaactgagaccctttaatcctcaa |
335 |
Q |
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| T |
42654890 |
gactaatcttacatttcctcctaaaattttgacttaactgagaccctctaatcctcaa |
42654947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 43053188 - 43053037
Alignment:
| Q |
178 |
gcagatgcatcaagcagcacatgccaattgttcctgtgagcctctgagatccaatgcattgttccactagcatctgctggataagagaataagccttttg |
277 |
Q |
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| T |
43053188 |
gcagatgcatcaagcaaaacatgccaatagttcctacgagcctcagaaatccaatgcattttcccattcacatctgcttcataagcaaataaaccttttg |
43053089 |
T |
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| Q |
278 |
gactgattttacacctcctcctaaagtttttacttaactgagaccctttaatcct |
332 |
Q |
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| T |
43053088 |
gactaatcttaca---tctcctaaaattttgacttagctgagaccctctaatcct |
43053037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 43053306 - 43053265
Alignment:
| Q |
42 |
ctttctgactaaaagacaagtgattcttgaaggattggaatt |
83 |
Q |
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| T |
43053306 |
ctttctgatcaatagacaagtgattcttgaaggattggaatt |
43053265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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