View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_31 (Length: 346)
Name: NF19529_low_31
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 23430891 - 23430570
Alignment:
| Q |
10 |
aagaatatgaacacttaacattgcatcttcatttccactagacccacatcaacaaatcaaattatccta---atacataaagtacattaactagtataac |
106 |
Q |
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| T |
23430891 |
aagaaaatgaacacttaacattgcatcttcatttccactagacccacatcaacaaatcaaattatcctcctcatacataaagtacattaactagtataac |
23430792 |
T |
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| Q |
107 |
tattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatctacaacatcttgtccttgatttgcgatatttccaaca |
206 |
Q |
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| T |
23430791 |
tattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcggcatctacaacatcttgtccttgattcgcgatatttccaaca |
23430692 |
T |
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| Q |
207 |
tcttttgcagtttcaccaatcctatctgcaccttcactaacaacattgaagaccccttgcatgcttctacgagtggaaggcaatgtcaggtgaacatggg |
306 |
Q |
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| T |
23430691 |
tcttttgcagtttcaccaatcctatctgcaccttcactaacaacattgaagaccccttgcatgcttctacgagtggaaggcaatgtcaggtgaacatggg |
23430592 |
T |
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| Q |
307 |
ttggagaataagtggtgggaag |
328 |
Q |
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| T |
23430591 |
ttggagagtaagtggtgggaag |
23430570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 23438901 - 23438789
Alignment:
| Q |
70 |
attatcctaatacataaagtacattaactagtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatc |
169 |
Q |
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| T |
23438901 |
attatccttatacataaactacataaaccagtataactgttataatataactggaaggaatgtaaaaagaggtggcatgggaaactttcccagcaacatc |
23438802 |
T |
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| Q |
170 |
tacaacatcttgt |
182 |
Q |
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| T |
23438801 |
tacgacatcttgt |
23438789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 23438687 - 23438628
Alignment:
| Q |
269 |
gcttctacgagtggaaggcaatgtcaggtgaacatgggttggagaataagtggtgggaag |
328 |
Q |
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| T |
23438687 |
gcttctacgagtggaaggcaatgtcaggtgaagatgggtagaagagtaagtcgtgggaag |
23438628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 23445637 - 23445571
Alignment:
| Q |
57 |
atcaacaaatcaaattatcctaatacataaagtacattaactagtataactattataatataactgg |
123 |
Q |
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| T |
23445637 |
atcaacaaataaaattattctcatgcataaagtacataaaccattataactgttataatataactgg |
23445571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 328
Target Start/End: Complemental strand, 23445431 - 23445363
Alignment:
| Q |
260 |
cccttgcatgcttctacgagtggaaggcaatgtcaggtgaacatgggttggagaataagtggtgggaag |
328 |
Q |
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| T |
23445431 |
ccctagcatgcgtctaccggtggaaggcaatgtcatgtgaatatgggtaggagagtaagtggcgggaag |
23445363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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