View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_32 (Length: 336)
Name: NF19529_low_32
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 6924797 - 6925121
Alignment:
| Q |
1 |
actctttttatatttttgttatagaagatatttcattcattcaaatagctnnnnnnnc-caacattacaaatgtgtagatccctatccattttcggggta |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924797 |
actctttttatatttttgttatagaagatatttcattcattcaaatagctaaaaaaaaacaacattacaaatgtgtagatccctatccattttcggggta |
6924896 |
T |
|
| Q |
100 |
taccaattgtaggggtaaagtacagaatttgtaaattggaccataaattttgtactctctaaccttaaattattgcatnnnnnnnctataatagtccctc |
199 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| ||| |
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| T |
6924897 |
taccaattataggggtaaagtacagaatttgtaaattggaccttaaattttgtactctctaaccttaaattattgcttaaaaaaactataatagtcactc |
6924996 |
T |
|
| Q |
200 |
tgttgttagaataatgagtcaacgacacaattaacataa---tattgcccaataaaaactctaacatgatcaatcattgtgttcnnnnnnnncttgctat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6924997 |
tgttgttagaataatgagtcaacgacacaattaacataatactattgcccaataaaaactctaacatgatcaatcattgtgttc-tttttttcttgctat |
6925095 |
T |
|
| Q |
297 |
ttctacataatttgttttggaaattg |
322 |
Q |
| |
|
||||||||||| |||||||||||||| |
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|
| T |
6925096 |
ttctacataatatgttttggaaattg |
6925121 |
T |
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