View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_34 (Length: 312)
Name: NF19529_low_34
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 45479618 - 45479324
Alignment:
| Q |
14 |
ggaaatgggatagacatgtctacctttatcatcaatgaagaaccgttagatgaaaagggaaagtcaccaagagggactccaagtcctagagattcttctt |
113 |
Q |
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| T |
45479618 |
ggaaatgggatagacatgtctacctttatcatcaatgaagaaccgttagatgaaaagggaaagtcaccaagagggactccaagtcctagagattcttctt |
45479519 |
T |
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| Q |
114 |
catatacatttggtagtagtctacctgagtctgatagggccaagattcaactagagcaatcaaggttacttgatattctcaacaagaaatcctcatttac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45479518 |
catatacatttggtagtagtctacctgagtctgatagggccaagattcaactagagcaatcaaggttacttgatattctcaacaagaaatcctcatttac |
45479419 |
T |
|
| Q |
214 |
cggaagtttcatatctatccccgaaattcaagctcaaaataaggttttgaagcattacggtttgacagatgacgaataccttgttcttttcactc |
308 |
Q |
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| T |
45479418 |
cggaagtttcatatcgatccccgaaattcaagctcaaaataaggttttgaagcattacggtttgacagatgacgaataccttgttctcttcactc |
45479324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 42655252 - 42655109
Alignment:
| Q |
165 |
tagagcaatcaaggttacttgatattctcaacaagaaatcctcatttaccggaagtttcatatctatccccgaaattcaagctcaaaataaggttttgaa |
264 |
Q |
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|||||| |||||| ||||||||||||||||||| |||||||| ||| | ||||||||||| || || || ||||||||||||||||||||||||||||| |
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| T |
42655252 |
tagagccatcaagactacttgatattctcaacaaaaaatcctcctttcctggaagtttcatctcgataccggaaattcaagctcaaaataaggttttgaa |
42655153 |
T |
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| Q |
265 |
gcattacggtttgacagatgacgaataccttgttcttttcactc |
308 |
Q |
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| T |
42655152 |
acattgtggtttgcctgatgatgagtatttggttcttttcactc |
42655109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 269
Target Start/End: Original strand, 43052731 - 43052836
Alignment:
| Q |
164 |
ctagagcaatcaaggttacttgatattctcaacaagaaatcctcatttaccggaagtttcatatctatccccgaaattcaagctcaaaataaggttttga |
263 |
Q |
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||||||| |||||| |||||||||||||||| || ||||| || ||| | ||||| ||||| || ||||| |||||||||||||| ||||||||||||| |
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| T |
43052731 |
ctagagccatcaagactacttgatattctcaataaaaaatcatcctttcctggaagattcatctcgatcccggaaattcaagctcagaataaggttttga |
43052830 |
T |
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| Q |
264 |
agcatt |
269 |
Q |
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|||||| |
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| T |
43052831 |
agcatt |
43052836 |
T |
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