View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_35 (Length: 312)
Name: NF19529_low_35
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 28489083 - 28488815
Alignment:
| Q |
14 |
actaattacaagtaagattttaggaaaaatgttcattcattatgatactccggttttgttggtaaatacccttggactttcagaagacttttgcaaaggg |
113 |
Q |
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| T |
28489083 |
actaattacaagtaagattttaggaaaactgttcattcattacaatactccggttttattgttaaatacc-ttggactttcagaagactgttgcaaaggg |
28488985 |
T |
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| Q |
114 |
cgaaactattatcgatgatatacggtggcaaaagaaacttcaagaaactgaaaggtcacaatgtccttatactattcgattttgaaggtgttaaattaaa |
213 |
Q |
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| T |
28488984 |
cgaaagtattatcgatgatatacggtggcaaaagaaacttcaagaaactgaaaggtcacaatgtccttatactattcgattttgaaggtgttaaattaaa |
28488885 |
T |
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| Q |
214 |
aagtgaaaacccaagtaacacttcacgagctagtagggatcaaaaaatgttaaattgtcccaagagcaca |
283 |
Q |
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| T |
28488884 |
aagtgaaaacccaagtaacacttcacgagctagtagggatcaaaaaatgttaaaatgtcccaagagcaca |
28488815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 28477340 - 28477238
Alignment:
| Q |
97 |
aagacttttgcaaagggcgaaactattatcgatgatatacggtggcaaaagaaacttcaagaaactgaaaggtcacaatgtccttat-actattcgattt |
195 |
Q |
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|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| || ||||| ||| |||||||| |
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| T |
28477340 |
aagacttttgcaaaaggcgaaagtattatcgatgctatacggtggcaaaagaaacttcaagcaaccgaaaggtcacaacgtgcttataactcttcgattt |
28477241 |
T |
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| Q |
196 |
tga |
198 |
Q |
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||| |
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| T |
28477240 |
tga |
28477238 |
T |
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