View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19529_low_36 (Length: 305)

Name: NF19529_low_36
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19529_low_36
NF19529_low_36
[»] chr3 (25 HSPs)
chr3 (28-129)||(13845465-13845566)
chr3 (28-129)||(35222956-35223057)
chr3 (28-89)||(2941576-2941637)
chr3 (30-129)||(40993275-40993374)
chr3 (30-129)||(55401095-55401194)
chr3 (28-130)||(25093520-25093622)
chr3 (28-128)||(8789489-8789591)
chr3 (4-69)||(14028001-14028066)
chr3 (45-128)||(15864868-15864950)
chr3 (30-130)||(20503485-20503585)
chr3 (34-90)||(3631708-3631764)
chr3 (30-127)||(28918021-28918120)
chr3 (30-129)||(26492145-26492244)
chr3 (28-75)||(49505148-49505195)
chr3 (30-75)||(7928470-7928515)
chr3 (64-129)||(15796223-15796288)
chr3 (30-90)||(10954972-10955032)
chr3 (28-130)||(11251996-11252096)
chr3 (28-128)||(32804485-32804581)
chr3 (30-84)||(18426969-18427023)
chr3 (28-90)||(45451571-45451633)
chr3 (29-130)||(8842348-8842449)
chr3 (64-129)||(25064972-25065037)
chr3 (44-84)||(6780404-6780444)
chr3 (30-90)||(24633380-24633440)
[»] chr2 (31 HSPs)
chr2 (28-130)||(24009314-24009415)
chr2 (28-129)||(20242667-20242768)
chr2 (28-129)||(36096304-36096416)
chr2 (73-129)||(18054716-18054772)
chr2 (58-129)||(35056927-35056998)
chr2 (30-127)||(2438661-2438758)
chr2 (47-129)||(34993922-34994004)
chr2 (31-79)||(5367213-5367261)
chr2 (44-128)||(28596503-28596587)
chr2 (30-129)||(15972893-15972992)
chr2 (30-79)||(31808097-31808146)
chr2 (30-131)||(37558997-37559098)
chr2 (58-130)||(34784910-34784982)
chr2 (61-129)||(42511322-42511390)
chr2 (58-129)||(4207915-4207986)
chr2 (28-75)||(20922922-20922969)
chr2 (67-130)||(26769579-26769642)
chr2 (51-129)||(19580225-19580303)
chr2 (28-90)||(37411223-37411285)
chr2 (28-61)||(18054811-18054844)
chr2 (30-75)||(34691799-34691844)
chr2 (30-75)||(34714211-34714256)
chr2 (64-129)||(41843500-41843565)
chr2 (64-132)||(11223790-11223857)
chr2 (28-76)||(18589214-18589262)
chr2 (45-129)||(18840953-18841037)
chr2 (65-129)||(19959881-19959945)
chr2 (58-90)||(22084798-22084830)
chr2 (30-90)||(30404829-30404889)
chr2 (65-129)||(30717459-30717523)
chr2 (28-64)||(35449531-35449567)
[»] chr1 (36 HSPs)
chr1 (28-128)||(10577676-10577776)
chr1 (58-129)||(25934675-25934746)
chr1 (30-129)||(5898206-5898305)
chr1 (30-129)||(37598852-37598950)
chr1 (30-129)||(51410045-51410144)
chr1 (32-128)||(12918967-12919063)
chr1 (57-129)||(32461393-32461465)
chr1 (57-129)||(41597410-41597482)
chr1 (45-129)||(46348323-46348407)
chr1 (30-129)||(18337349-18337448)
chr1 (30-129)||(22515827-22515926)
chr1 (28-91)||(30749858-30749921)
chr1 (28-91)||(30771309-30771372)
chr1 (30-130)||(52903269-52903366)
chr1 (29-90)||(29163360-29163421)
chr1 (30-127)||(42359391-42359488)
chr1 (28-84)||(40181889-40181945)
chr1 (58-129)||(9828103-9828174)
chr1 (28-130)||(34712322-34712424)
chr1 (28-69)||(7918211-7918252)
chr1 (28-69)||(25361904-25361945)
chr1 (258-294)||(21150163-21150199)
chr1 (28-75)||(1864874-1864921)
chr1 (65-128)||(6414932-6414995)
chr1 (29-80)||(17705576-17705626)
chr1 (28-91)||(36878479-36878542)
chr1 (58-129)||(47989556-47989627)
chr1 (30-127)||(1486646-1486748)
chr1 (30-84)||(13997903-13997957)
chr1 (30-128)||(40258874-40258972)
chr1 (28-77)||(14332634-14332683)
chr1 (28-69)||(34371731-34371772)
chr1 (45-82)||(39130754-39130791)
chr1 (28-69)||(44482248-44482289)
chr1 (30-90)||(1815277-1815337)
chr1 (31-75)||(13436479-13436523)
[»] chr8 (27 HSPs)
chr8 (30-129)||(3951476-3951575)
chr8 (29-128)||(43737752-43737851)
chr8 (28-127)||(3025569-3025668)
chr8 (58-129)||(34450961-34451032)
chr8 (28-129)||(4786278-4786379)
chr8 (28-129)||(33405324-33405425)
chr8 (28-130)||(26902103-26902216)
chr8 (47-84)||(126332-126369)
chr8 (57-125)||(4122182-4122250)
chr8 (44-127)||(926730-926813)
chr8 (58-129)||(22652035-22652106)
chr8 (29-62)||(34451044-34451077)
chr8 (28-84)||(14134717-14134773)
chr8 (28-129)||(37283755-37283851)
chr8 (28-84)||(40332209-40332265)
chr8 (58-129)||(6065586-6065657)
chr8 (28-127)||(20679337-20679436)
chr8 (58-129)||(28745557-28745628)
chr8 (30-129)||(36450694-36450793)
chr8 (28-74)||(13844591-13844637)
chr8 (71-129)||(18964251-18964309)
chr8 (28-74)||(34897103-34897149)
chr8 (64-129)||(8343381-8343446)
chr8 (48-129)||(24413499-24413580)
chr8 (59-128)||(29447040-29447109)
chr8 (28-124)||(31109463-31109559)
chr8 (28-76)||(31236570-31236618)
[»] chr6 (36 HSPs)
chr6 (30-129)||(33001229-33001328)
chr6 (30-129)||(13789174-13789273)
chr6 (30-129)||(13797793-13797892)
chr6 (28-129)||(18367854-18367966)
chr6 (28-128)||(9658897-9658998)
chr6 (30-130)||(34595154-34595254)
chr6 (29-81)||(7740660-7740712)
chr6 (28-129)||(16488519-16488631)
chr6 (28-129)||(17327590-17327696)
chr6 (28-129)||(13360313-13360413)
chr6 (45-126)||(32978842-32978923)
chr6 (28-79)||(19040370-19040421)
chr6 (30-129)||(24645501-24645600)
chr6 (30-129)||(28152118-28152217)
chr6 (30-128)||(17841530-17841628)
chr6 (28-132)||(7377997-7378101)
chr6 (30-130)||(8101105-8101205)
chr6 (28-127)||(7265535-7265634)
chr6 (64-127)||(12696383-12696446)
chr6 (47-86)||(30851637-30851676)
chr6 (28-126)||(7996325-7996419)
chr6 (28-126)||(8022382-8022476)
chr6 (28-129)||(32511606-32511707)
chr6 (45-129)||(6898221-6898305)
chr6 (30-129)||(8776908-8777012)
chr6 (30-129)||(7977770-7977869)
chr6 (58-129)||(16766756-16766827)
chr6 (28-69)||(4388103-4388144)
chr6 (28-69)||(9025494-9025535)
chr6 (64-129)||(9629448-9629513)
chr6 (30-83)||(28715315-28715368)
chr6 (30-83)||(29020932-29020985)
chr6 (63-128)||(31384983-31385048)
chr6 (28-84)||(31579212-31579266)
chr6 (49-129)||(4877982-4878061)
chr6 (64-124)||(24138485-24138545)
[»] chr7 (42 HSPs)
chr7 (30-134)||(15680829-15680933)
chr7 (28-129)||(18212973-18213074)
chr7 (28-126)||(39138462-39138560)
chr7 (131-183)||(22885002-22885054)
chr7 (162-250)||(22803682-22803770)
chr7 (31-128)||(18035806-18035902)
chr7 (28-128)||(20549809-20549909)
chr7 (162-250)||(22870180-22870268)
chr7 (64-129)||(2334314-2334379)
chr7 (64-128)||(4794954-4795018)
chr7 (258-294)||(22810159-22810195)
chr7 (194-250)||(22829409-22829465)
chr7 (30-130)||(25481922-25482022)
chr7 (28-128)||(32287404-32287504)
chr7 (28-79)||(9482952-9483003)
chr7 (28-130)||(21880170-21880272)
chr7 (47-128)||(3554447-3554528)
chr7 (64-129)||(5409771-5409836)
chr7 (64-129)||(9778559-9778624)
chr7 (44-128)||(10359633-10359717)
chr7 (64-124)||(13770750-13770810)
chr7 (45-129)||(21864843-21864927)
chr7 (258-290)||(22831546-22831578)
chr7 (194-250)||(22887676-22887732)
chr7 (30-129)||(43027404-43027508)
chr7 (28-87)||(5835265-5835324)
chr7 (30-121)||(41020516-41020607)
chr7 (47-129)||(598245-598327)
chr7 (28-69)||(5548694-5548735)
chr7 (59-128)||(11665370-11665439)
chr7 (28-69)||(22602710-22602751)
chr7 (28-65)||(22868060-22868097)
chr7 (30-99)||(26733324-26733393)
chr7 (28-69)||(32308138-32308179)
chr7 (31-79)||(640134-640182)
chr7 (44-128)||(22484059-22484143)
chr7 (258-290)||(22805824-22805856)
chr7 (258-294)||(22840573-22840609)
chr7 (258-294)||(22842685-22842721)
chr7 (194-250)||(22874305-22874361)
chr7 (258-294)||(22886010-22886046)
chr7 (58-130)||(24339701-24339773)
[»] chr5 (27 HSPs)
chr5 (46-125)||(30098982-30099061)
chr5 (58-128)||(6401557-6401627)
chr5 (28-129)||(42029770-42029871)
chr5 (30-129)||(21576685-21576784)
chr5 (28-129)||(21814279-21814391)
chr5 (28-129)||(28588614-28588715)
chr5 (28-127)||(30502330-30502429)
chr5 (28-127)||(30542673-30542772)
chr5 (30-127)||(21190998-21191095)
chr5 (57-129)||(16304366-16304438)
chr5 (28-84)||(18421826-18421882)
chr5 (58-126)||(19452998-19453066)
chr5 (58-129)||(21522809-21522880)
chr5 (58-129)||(21533375-21533446)
chr5 (30-129)||(43564901-43565000)
chr5 (44-90)||(26312803-26312849)
chr5 (47-89)||(32630715-32630757)
chr5 (61-129)||(40000493-40000561)
chr5 (47-90)||(23012387-23012430)
chr5 (58-129)||(39698600-39698671)
chr5 (28-129)||(6770561-6770655)
chr5 (28-69)||(3966521-3966562)
chr5 (30-79)||(15884008-15884057)
chr5 (28-129)||(17123066-17123166)
chr5 (54-126)||(39268541-39268613)
chr5 (1-62)||(39758263-39758324)
chr5 (30-90)||(42893380-42893440)
[»] chr4 (28 HSPs)
chr4 (28-129)||(5414101-5414213)
chr4 (28-129)||(35161054-35161155)
chr4 (28-129)||(19097835-19097935)
chr4 (30-129)||(23292926-23293025)
chr4 (30-130)||(49431046-49431146)
chr4 (58-128)||(30982808-30982878)
chr4 (30-84)||(54580008-54580062)
chr4 (45-130)||(2361914-2361999)
chr4 (28-130)||(36635342-36635450)
chr4 (30-130)||(34306743-34306843)
chr4 (28-79)||(10499260-10499311)
chr4 (30-129)||(28964188-28964287)
chr4 (28-90)||(8402721-8402783)
chr4 (58-128)||(12323968-12324038)
chr4 (59-129)||(24613630-24613700)
chr4 (30-87)||(36509074-36509131)
chr4 (30-79)||(40179626-40179675)
chr4 (29-129)||(4672025-4672125)
chr4 (30-90)||(12797317-12797377)
chr4 (30-129)||(16073414-16073513)
chr4 (30-129)||(35157925-35158024)
chr4 (58-129)||(46083920-46083991)
chr4 (28-78)||(8423709-8423759)
chr4 (38-128)||(20950368-20950458)
chr4 (44-90)||(38846991-38847037)
chr4 (30-130)||(21945523-21945623)
chr4 (53-129)||(23861369-23861445)
chr4 (30-90)||(29205464-29205524)
[»] scaffold0623 (1 HSPs)
scaffold0623 (28-128)||(5926-6037)
[»] scaffold0652 (1 HSPs)
scaffold0652 (30-128)||(403-501)
[»] scaffold0083 (1 HSPs)
scaffold0083 (44-130)||(45469-45555)
[»] scaffold0361 (1 HSPs)
scaffold0361 (30-132)||(14550-14649)
[»] scaffold0053 (1 HSPs)
scaffold0053 (45-130)||(8833-8918)
[»] scaffold0022 (1 HSPs)
scaffold0022 (28-129)||(90861-90962)
[»] scaffold0050 (1 HSPs)
scaffold0050 (30-90)||(70298-70358)
[»] scaffold0116 (1 HSPs)
scaffold0116 (28-69)||(9916-9957)
[»] scaffold0475 (1 HSPs)
scaffold0475 (45-129)||(3343-3427)
[»] scaffold0512 (1 HSPs)
scaffold0512 (47-129)||(4976-5058)
[»] scaffold0003 (1 HSPs)
scaffold0003 (64-130)||(241659-241725)
[»] scaffold0306 (1 HSPs)
scaffold0306 (58-127)||(13454-13523)
[»] scaffold0152 (1 HSPs)
scaffold0152 (58-127)||(21804-21873)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 13845566 - 13845465
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  13845566 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttcat 13845467  T
Q  128 ag 129  Q
    ||    
T  13845466 ag 13845465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 35222956 - 35223057
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| || |||||||||||||||| |||||||||| ||||||||||||||||||  |||||  |||||| | |||||||||||||||||    
T  35222956 agaaaatcacataattcaatgtaattatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttcat 35223055  T
Q  128 ag 129  Q
    ||    
T  35223056 ag 35223057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 2941576 - 2941637
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgaca 89  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  2941576 agaaaatcacaaaatacagtgtaattatatgtgtcggtgtcggacacgacacgtgtctgaca 2941637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 40993374 - 40993275
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||||||||| |||| ||||| |  ||||| || |||| | |||||||| ||||||||||    
T  40993374 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 55401095 - 55401194
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| |||  |||||||||| | ||||| ||||||||||||||||||||| ||||| || ||||| || |||| | |||||||||||||||||||    
T  55401095 aaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 25093520 - 25093622
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||| |||| |||| ||||| ||| ||| ||| |||  |||||||| |||||||| |    
T  25093520 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacactgaagcacttctaatctgaagagtgttcgtgcttctt 25093619  T
Q  128 aga 130  Q
    |||    
T  25093620 aga 25093622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 8789591 - 8789489
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacg--acacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttc 125  Q
    ||||||||||| ||| | ||||||||||||||||| ||||||||||||  |||| |||| ||||| || ||||| || |||| | |||||||||||||||    
T  8789591 agaaaatcacataattccgtgtaattatatgtgtcggtgtcggacacgacacacatgtcggacaccgagacacgcctaatccgaggagtgtccgtgcttc 8789492  T
Q  126 ata 128  Q
    |||    
T  8789491 ata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 14028001 - 14028066
Alignment:
Q  4 gacaccgacacagctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg 69  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||| ||||||    
T  14028001 gacaccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcg 14028066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 15864868 - 15864950
Alignment:
Q  45 agtgtaattatatgtgtcagtgtcggacac-gacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    |||||||| ||| ||||| ||||||||||| |||||||||||||||||| | |||| || |||||||||||||||||||||||||    
T  15864868 agtgtaatcataggtgtc-gtgtcggacaccgacacgtgtctgacacggga-cacgcctaatccaaagagtgtccgtgcttcata 15864950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 20503485 - 20503585
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||| ||| ||||||||||| | ||||| |||| ||||||||||| |||||||||| |  ||||| || |||| | |||||||||||||||||||    
T  20503485 aaaatgacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 20503584  T
Q  130 a 130  Q
    |    
T  20503585 a 20503585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 3631708 - 3631764
Alignment:
Q  34 tcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| |||| |||||    
T  3631708 tcacataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacac 3631764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 28918021 - 28918120
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg--gacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||| ||| ||||||||||| | ||||| ||||||  ||||||||||||||| ||||| |  ||||| || |||||| |||||||| ||||||||    
T  28918021 aaaatcacataattcagtgtaattacaagtgtcggtgtcgtggacacgacacgtgtccgacactgggacacgcctaatccaaggagtgtccctgcttcat 28918120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 26492244 - 26492145
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||| | ||| ||||||||||| | || || |||||||||||||||| ||||||||||  | |||||||| |||| | || |||||| |||||||||    
T  26492244 aaaatcatacaattcagtgtaattacaagtatcggtgtcggacacgacacatgtctgacaccaagacacgtctaatccgaggaatgtccgcgcttcatag 26492145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 49505195 - 49505148
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacg 75  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||    
T  49505195 agaaaatcacataatttagtgtaattatatgtgtcagtgtcggacacg 49505148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 7928470 - 7928515
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacg 75  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  7928470 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacacg 7928515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 15796288 - 15796223
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||||| |||||||||  |||| | |||||| || ||||||||||||| ||||||||||||    
T  15796288 gtgtcggacacaacacgtgtccaacaccggaacacgcctaatccaaagagtgttcgtgcttcatag 15796223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 10954972 - 10955032
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||||||| ||| ||||||||| | | ||||| ||||||||||||||||||||| |||||    
T  10954972 aaaatcacataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacac 10955032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 11251996 - 11252096
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| ||||||||||||  ||||| ||||| ||||| ||||||||| | ||  | |||||| || |||| | ||||||| |||||||||    
T  11251996 agaaaatcacataattcagtgtaattat--gtgtcggtgtcagacacaacacgtgtccggcatcggaacacgcctaatccgaggagtgtctgtgcttcat 11252093  T
Q  128 aga 130  Q
    |||    
T  11252094 aga 11252096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 32804581 - 32804485
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| |||  ||||||||||||||||||    ||||||||||||| |||| | ||| |||| ||| || |||  | |||||||||||||||||    
T  32804581 agaaaatcacataatttagtgtaattatatgtgtc----tcggacacgacacatgtccgccactgaaaaacgcctaatctgaggagtgtccgtgcttcat 32804486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 18426969 - 18427023
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtc 84  Q
    ||||||||| ||| | |||||||||||| |||| |||||||| ||||||||||||    
T  18426969 aaaatcacataattcggtgtaattatatatgtcggtgtcggatacgacacgtgtc 18427023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 45451571 - 45451633
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||||||||| | | |||| |||| ||||||||| |||||||||||||||| |||| |||||    
T  45451571 agaaaatcacatacttcagtataataatatgtgtcggtgtcggacacgacacatgtccgacac 45451633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 8842348 - 8842449
Alignment:
Q  29 gaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    |||||||||| |||   |||||||||||| |||| ||||| |||||||||| |||  || |  || ||||| || |||| | ||||||||||||||||||    
T  8842348 gaaaatcacataatttggtgtaattatatatgtcggtgtcagacacgacacatgttagatattgagacacgcctaatccgaggagtgtccgtgcttcata 8842447  T
Q  129 ga 130  Q
    ||    
T  8842448 ga 8842449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 25064972 - 25065037
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||||||||||||||||||||| |  |||||  |||||| | |||||| |||||| |||||    
T  25064972 gtgtcggacacgacacgtgtctgacaccgggacacggtttatccgaggagtgttcgtgctccatag 25065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 6780444 - 6780404
Alignment:
Q  44 cagtgtaattatatgtgtcagtgtcggacacgacacgtgtc 84  Q
    ||||||||||||||||||  ||||||||||| |||||||||    
T  6780444 cagtgtaattatatgtgttggtgtcggacacaacacgtgtc 6780404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 24633440 - 24633380
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||||||  ||| || |||||||||||||||| |||| ||||||||||| ||||| ||||    
T  24633440 aaaatcacgtaattcaatgtaattatatgtgtcggtgttggacacgacacttgtctaacac 24633380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 24009314 - 24009415
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||  ||||| ||||||||| |||||||||||||||||    
T  24009314 agaaaatcacaaaatgcagtgtaaat-tatgtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcat 24009412  T
Q  128 aga 130  Q
    |||    
T  24009413 aga 24009415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 20242768 - 20242667
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||   ||||| ||||||| ||||||||| |||||||||    
T  20242768 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatccgaagagtgtctgtgcttcat 20242669  T
Q  128 ag 129  Q
    ||    
T  20242668 ag 20242667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 36096416 - 36096304
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg-----------gacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgt 116  Q
    |||||||||||||||||||||||||||||| |||| ||||||           |||||||||||||||||||||||  ||||| |||| |||||||||||    
T  36096416 agaaaatcacaaaatgcagtgtaattatatttgtcggtgtcgtgtcgatgtcggacacgacacgtgtctgacacggggacacgccttaaccaaagagtgt 36096317  T
Q  117 ccgtgcttcatag 129  Q
    |||||||||||||    
T  36096316 ccgtgcttcatag 36096304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 18054772 - 18054716
Alignment:
Q  73 acgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  18054772 acgacacgtgtctgacacggaaacacgccttatccaaggaatgtccgtgcttcatag 18054716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 35056927 - 35056998
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || |||  | |||||||||||||||||||    
T  35056927 gtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 2438758 - 2438661
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||| ||| ||||||||||| | ||||| |||||||||||||||| |||| ||||| |  ||||| || |||| | |||||||||||||||||    
T  2438758 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 34994004 - 34993922
Alignment:
Q  47 tgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||| |  ||||| || || ||| |||||| ||||||||||||    
T  34994004 tgtaattatatgtgtcagtgtcgaacacgacatgtgtccgacactgggacacgcctaattcaaggagtgttcgtgcttcatag 34993922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 5367213 - 5367261
Alignment:
Q  31 aaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacac 79  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  5367213 aaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacac 5367261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 28596503 - 28596587
Alignment:
Q  44 cagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    ||||||||||||| ||||| ||||||||||||||||||||| |||||    ||||  || |||| | ||||||||||||||||||    
T  28596503 cagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 15972893 - 15972992
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||| ||| ||||||||||| | ||||| ||||||||||||||||||||| ||| | |  ||||  || |||| |||| ||||||||||||||||    
T  15972893 aaaattacacaattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttcatag 15972992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 31808097 - 31808146
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacac 79  Q
    ||||||||| ||| |||||||||||||||||||||||| | |||||||||    
T  31808097 aaaatcacataattcagtgtaattatatgtgtcagtgttgaacacgacac 31808146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 37558997 - 37559098
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| || |||||||| | ||||| |||||||||  |||||||||| ||||| |  |||||  | |||| | |||||||||||||||||||    
T  37558997 aaaatcacataattcaatgtaattacaagtgtcggtgtcggacttgacacgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttcatag 37559096  T
Q  130 aa 131  Q
    ||    
T  37559097 aa 37559098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 34784982 - 34784910
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcataga 130  Q
    ||||| || ||||||||||||| ||||||||||||  ||||| ||||| | | ||||||| ||||||||||||    
T  34784982 gtgtcggtatcggacacgacacctgtctgacacggggacacgccttattcgaggagtgtctgtgcttcataga 34784910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 42511390 - 42511322
Alignment:
Q  61 tcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||||||||||| ||||||||| ||||| |  ||||| || |||| | |||||||||||||||||||    
T  42511390 tcagtgtcggacacaacacgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 4207915 - 4207986
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||||||||||||||||||||  ||||| ||||||||| | |||| |||||||| | || |||||||    
T  4207915 gtgtcggtgtcggacacgacacgtgttcgacaccgaaacacgtttaatccgaagagtgttcatgtttcatag 4207986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 20922969 - 20922922
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacg 75  Q
    ||||||||||| |||  |||||||||||||||||| ||||||||||||    
T  20922969 agaaaatcacataatttagtgtaattatatgtgtctgtgtcggacacg 20922922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 26769579 - 26769642
Alignment:
Q  67 tcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcataga 130  Q
    |||||||||||||||||| ||||| |  ||||| || |||| | ||||||||||||||||||||    
T  26769579 tcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcataga 26769642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 19580303 - 19580225
Alignment:
Q  51 attatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||| || || ||||||||||| |||||||||  ||||  |||||| ||| |||| ||||||||| |||||||||||    
T  19580303 attataagtatcggtgtcggacacaacacgtgtccaacaccaaaacacatctaatccgaagagtgtctgtgcttcatag 19580225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 37411285 - 37411223
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||||||||| ||| |||||| ||||||||||||  ||||| ||||||| |||||| |||||    
T  37411285 agaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacacgacgcgtgtccgacac 37411223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 18054844 - 18054811
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgt 61  Q
    ||||||||||||| ||||||||||||||||||||    
T  18054844 agaaaatcacaaactgcagtgtaattatatgtgt 18054811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 34691844 - 34691799
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacg 75  Q
    ||||||| | ||| ||||||||||||||||||| ||||||||||||    
T  34691844 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg 34691799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 34714256 - 34714211
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacg 75  Q
    ||||||| | ||| ||||||||||||||||||| ||||||||||||    
T  34714256 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg 34714211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 41843500 - 41843565
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||||||||||| |||||||  |||||  |||||| | ||||||| |||||||||||    
T  41843500 gtgtcggacgcgacacgtgtccgacacggggacacgctttatccgaggagtgtctgtgcttcatag 41843565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 11223857 - 11223790
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatagaat 132  Q
    |||||||||||||||| |||||||||| |  ||||| || |||  | ||||||||||||||||||||||    
T  11223857 gtgtcggacacgacac-tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttcatagaat 11223790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 18589214 - 18589262
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacga 76  Q
    ||||||| ||| ||| |||| ||| ||||||||||||||||||||||||    
T  18589214 agaaaattacacaattcagtctaactatatgtgtcagtgtcggacacga 18589262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 18841037 - 18840953
Alignment:
Q  45 agtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||||||| | ||||| ||||| |||||||||| |||| ||||| |  ||||  || |||| | |||||||||||||||||||    
T  18841037 agtgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 19959881 - 19959945
Alignment:
Q  65 tgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||| ||||||||| ||||| ||||| || || ||||| ||||||||||| || |||||||||||    
T  19959881 tgtcagacacgacaagtgtccgacaccgagacgcgtctaatccaaagagtatcggtgcttcatag 19959945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 22084830 - 22084798
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||||||||||||||| |||||||||||||||    
T  22084830 gtgtcagtgtcggacacaacacgtgtctgacac 22084798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 30404889 - 30404829
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||||||| ||| ||||||||||| | ||||| | |||||||||||||| |||| |||||    
T  30404889 aaaatcacataattcagtgtaattacaagtgtcggcgtcggacacgacacatgtccgacac 30404829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 30717523 - 30717459
Alignment:
Q  65 tgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||||||||||||||||  ||||| |  | ||| || |||||| |||||||||||||||||||    
T  30717523 tgtcggacacgacacgtgttcgacactgggatacgcctaatccaaggagtgtccgtgcttcatag 30717459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 35449531 - 35449567
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcag 64  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  35449531 agaaaatcacagaattcagtgtaattatatgtgtcag 35449567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 10577776 - 10577676
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||||||||||||||||||||||||||| | | |||||||||| ||||||||||||||  ||||| ||||||||| |||||||||||||||||    
T  10577776 agaaaatcacaaaatgcagtgtaattatatgtgtcgggggcggacacgacgcgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcat 10577677  T
Q  128 a 128  Q
    |    
T  10577676 a 10577676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 25934675 - 25934746
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| |||||||||||||||||||||||||||||  | ||| ||||||||| |||||||||||||||||||    
T  25934675 gtgtcggtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcatag 25934746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 5898305 - 5898206
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| ||||||||||||||| ||| ||||| |||||||||||||||  |||| |  |||||||| |||| | |||||||||||||| ||||    
T  5898305 aaaatcacataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtgctttatag 5898206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 37598852 - 37598950
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||||| | ||||||||||||| ||||| ||||||||||||||||||||| ||||  |  ||||| || |||| | |||||||||||||||||||    
T  37598852 aaaatcacaaatt-cagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 51410045 - 51410144
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| ||||||||||| | ||||| |||||||||||||||||| || ||||| || ||||| || |||||| |||| | ||||||||||||    
T  51410045 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcatag 51410144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 12918967 - 12919063
Alignment:
Q  32 aatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    ||||||| ||| || ||| |||||||||||  || ||||||||||||||||||||||||||  ||||| ||||||| |  ||||| |||||||||||    
T  12918967 aatcacataattcaatgtgattatatgtgttggtatcggacacgacacgtgtctgacacggggacacggcttatccgagaagtgttcgtgcttcata 12919063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 32461465 - 32461393
Alignment:
Q  57 tgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||| ||||||||||||||||||||||||||| |  ||||| || ||||||  ||||||||||||||||||    
T  32461465 tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 41597482 - 41597410
Alignment:
Q  57 tgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||| |||||||||||||||||||||||||||||  | |||  |||||||| ||||||| |||||||||||    
T  41597482 tgtgtccgtgtcggacacgacacgtgtctgacacggggatacgctttatccaaggagtgtctgtgcttcatag 41597410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 46348407 - 46348323
Alignment:
Q  45 agtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||||||| | ||||| ||||||||||||||||||||| ||||| || ||||| || |||| | | |||||||||||||||||    
T  46348407 agtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctgatccgaggtgtgtccgtgcttcatag 46348323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 18337349 - 18337448
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| ||||||||||| | ||||| ||||||||||| ||||||||| ||||| |  ||| | || |||| | |||||||||||||||||||    
T  18337349 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 22515926 - 22515827
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| |||  |||||||||| | ||||| |||||||||||||||| | || ||||| || ||||| || |||| | |||||||||||||||||||    
T  22515926 aaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 30749858 - 30749921
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacg 91  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||| ||| |||| |||||||    
T  30749858 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacaccacatgtgtttgacacg 30749921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 30771309 - 30771372
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacg 91  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||| ||| |||| |||||||    
T  30771309 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacaccacatgtgtttgacacg 30771372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 52903269 - 52903366
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||| | ||| ||||||||||||||||||| ||||||||||||    ||||| ||||| |  ||||| ||||| | |||||||||||||||||||||    
T  52903269 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg---tgtgtccgacaccgggacacggcttattcgaagagtgtccgtgcttcatag 52903365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 29163421 - 29163360
Alignment:
Q  29 gaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    |||||||||| ||| || | |||||||||||||| ||||||||||||||||||| |||||||    
T  29163421 gaaaatcacataattcaatttaattatatgtgtcggtgtcggacacgacacgtgcctgacac 29163360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 42359488 - 42359391
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||||| ||||||||||| | ||||| |||||||||| |||  ||||| ||||| |  ||||| || |||| | |||||||||||||||||    
T  42359488 aaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 40181889 - 40181945
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtc 84  Q
    ||||||||||| ||| |||||||||||||||| || ||||||||||| |||||||||    
T  40181889 agaaaatcacataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtc 40181945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 9828103 - 9828174
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||||| ||||||||||||||| ||||| |  |||||||| |||| | |||||||||||||||||||    
T  9828103 gtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 34712424 - 34712322
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||| ||| |||  |||||||||||||||||||||||||     ||||||||||  |||| |  |||||||| || ||| |||||||||||||||||    
T  34712424 agaaaataacataatttagtgtaattatatgtgtcagtgtcgtgtcggacacgtgtcctacactgggacacgtctaattcaaggagtgtccgtgcttcat 34712325  T
Q  128 aga 130  Q
    |||    
T  34712324 aga 34712322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 7918252 - 7918211
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg 69  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  7918252 agaaaatcacataattcagtgtaattatatgtgtcagtgtcg 7918211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 25361904 - 25361945
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg 69  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  25361904 agaaaatcacataattcagtgtaattatatgtgtcagtgtcg 25361945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 21150199 - 21150163
Alignment:
Q  258 aacatgattatagtttgtgaatgaataatgcttctgt 294  Q
    ||||||||||||||||||||||||| |||||||||||    
T  21150199 aacatgattatagtttgtgaatgaacaatgcttctgt 21150163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 1864921 - 1864874
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacg 75  Q
    ||||||||||| ||| ||||||||||||||||||| |||| |||||||    
T  1864921 agaaaatcacataattcagtgtaattatatgtgtcggtgttggacacg 1864874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 6414995 - 6414932
Alignment:
Q  65 tgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    |||||||||||||||||||||||||| |  |||| | | |||| | ||||||||||||||||||    
T  6414995 tgtcggacacgacacgtgtctgacaccgcgacacatttcatccgaggagtgtccgtgcttcata 6414932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 17705626 - 17705576
Alignment:
Q  29 gaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacg 80  Q
    |||||||||| ||| ||||||||||||||||||| ||||||||| |||||||    
T  17705626 gaaaatcacataattcagtgtaattatatgtgtc-gtgtcggacgcgacacg 17705576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 36878479 - 36878542
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacg 91  Q
    ||||||||||| ||| ||||||||||||| ||||| ||||| ||||||| || |||| ||||||    
T  36878479 agaaaatcacataattcagtgtaattataggtgtcggtgtctgacacgaaacatgtccgacacg 36878542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 47989556 - 47989627
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| |||||||||||||||| |||||||||  |  ||||| || |||| | |||||||||||||||||||    
T  47989556 gtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 1486748 - 1486646
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtc-----agtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgctt 124  Q
    ||||||||| ||| ||||||||||||| |||||      ||||||||||||||||||||| ||||| |  ||||| || |||| | ||||||| ||||||    
T  1486748 aaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgctt 1486649  T
Q  125 cat 127  Q
    |||    
T  1486648 cat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 13997903 - 13997957
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtc 84  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||| ||||||| ||||    
T  13997903 aaaatcacataattcagtgtaattatatgtgtcggtgttggagacgacacatgtc 13997957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 40258972 - 40258874
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    ||||||||| ||| ||||||||||| | ||||| ||||| |||||||||| |||| |||||    ||||| || |||| | |||||||| |||||||||    
T  40258972 aaaatcacataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 14332683 - 14332634
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgac 77  Q
    ||||||||||| |||  ||||||||||||||| || ||||||||||||||    
T  14332683 agaaaatcacataatttagtgtaattatatgtctcggtgtcggacacgac 14332634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 34371731 - 34371772
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg 69  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||    
T  34371731 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 34371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 39130791 - 39130754
Alignment:
Q  45 agtgtaattatatgtgtcagtgtcggacacgacacgtg 82  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  39130791 agtgtaattatatgtgtcggtgtcggacacaacacgtg 39130754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 44482248 - 44482289
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg 69  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||    
T  44482248 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 44482289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 1815277 - 1815337
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||||||| ||| ||||||||||| | ||||| ||||| |||||||||| |||| |||||    
T  1815277 aaaatcacataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacac 1815337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 13436479 - 13436523
Alignment:
Q  31 aaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacg 75  Q
    |||||||| ||| ||||||||||||||||||  ||||||||||||    
T  13436479 aaatcacataattcagtgtaattatatgtgttggtgtcggacacg 13436523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 3951575 - 3951476
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||| || |||||| |||| ||||||||||||||    
T  3951575 aaaatcacaaaatgcagtgtacttatatgtgtcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatccaaggagtttccgtgcttcatag 3951476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 43737851 - 43737752
Alignment:
Q  29 gaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||  | ||| ||||||||| ||||||||||||||||||    
T  43737851 gaaaatcacaaaatacagtgtaattatatgtgtcggtgtcggacacgacaggtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 43737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 3025569 - 3025668
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| |  ||||| || |||| | |||||||||||||||||    
T  3025569 agaaaatcacataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttcat 3025668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 34451032 - 34450961
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| |||||||||||||||||||||||||||||  ||||| ||||||||| |||||||||||||||||||    
T  34451032 gtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 34450961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 4786379 - 4786278
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||| |||||| ||||  || |  || ||| | ||||| |||||||||||||||||||||    
T  4786379 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggatacgacatgtgttcgataacgagacatggcttattcaaagagtgtccgtgcttcat 4786280  T
Q  128 ag 129  Q
    ||    
T  4786279 ag 4786278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 33405425 - 33405324
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    |||||| |||| |||  |||||||||||||||||| |||||||||||||||| ||||||||||    ||||| || |||||| ||||||||||||| |||    
T  33405425 agaaaaacacataatttagtgtaattatatgtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatccaatgagtgtccgtgctccat 33405326  T
Q  128 ag 129  Q
    ||    
T  33405325 ag 33405324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 26902216 - 26902103
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtc-----------agtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgt 116  Q
    ||||||||||| ||| |||||||||||||||||||           |||||||||||||||||||||||| |||||  ||||| ||||||  | ||||||    
T  26902216 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtctggcacggggacacgccttatctgaggagtgt 26902117  T
Q  117 ccgtgcttcataga 130  Q
    ||||||||||||||    
T  26902116 ccgtgcttcataga 26902103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 126369 - 126332
Alignment:
Q  47 tgtaattatatgtgtcagtgtcggacacgacacgtgtc 84  Q
    ||||||||||||||||||||||||||||||||||||||    
T  126369 tgtaattatatgtgtcagtgtcggacacgacacgtgtc 126332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 4122250 - 4122182
Alignment:
Q  57 tgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttc 125  Q
    ||||||| ||||  |||||||||||||  ||||| | ||||||||| ||||||||||||||||||||||    
T  4122250 tgtgtcaatgtcaaacacgacacgtgttggacaccggaacacgtctaatccaaagagtgtccgtgcttc 4122182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 926813 - 926730
Alignment:
Q  44 cagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||||| ||||| ||||||||| ||||||||||| ||||| |  ||| |  |||||| | |||||||||||||||||    
T  926813 cagtgtaattataagtgtcggtgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagtgtccgtgcttcat 926730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 22652035 - 22652106
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||||||||||||||| ||||| ||||| |  |||||||| |||| | |||||||||||||||||||    
T  22652035 gtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 34451077 - 34451044
Alignment:
Q  29 gaaaatcacaaaatgcagtgtaattatatgtgtc 62  Q
    ||||||||||||||||||||||||||||||||||    
T  34451077 gaaaatcacaaaatgcagtgtaattatatgtgtc 34451044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 14134717 - 14134773
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtc 84  Q
    ||||||||||| ||| |||||||||||||| |||| |||||  ||||||||||||||    
T  14134717 agaaaatcacataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtc 14134773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 37283851 - 37283755
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| ||||||||||||  ||||| |||| |||||||||||||||||   || |  |||||||| |||| | ||||| |||||||||||    
T  37283851 agaaaatcacataattcagtgtaattat--gtgtcggtgtgggacacgacacgtgtct---accgggacacgtctaatccgaggagtgcccgtgcttcat 37283757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 40332209 - 40332265
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtc 84  Q
    ||||||||||| ||| ||||||||||| | ||||| |||| ||||||||||||||||    
T  40332209 agaaaatcacataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgtc 40332265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 6065657 - 6065586
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||| ||||||||||||||| |||| ||||| | ||||||  | || ||| |||||||||||||||||||    
T  6065657 gtgtcaatgtcggacacgacacatgtccgacaccggaacacgcataattcaaggagtgtccgtgcttcatag 6065586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 20679436 - 20679337
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| | | ||||||||||||| ||||| ||||| ||| | ||||||||| ||||| |  ||||| |||| || | |||||||| ||||||||    
T  20679436 agaaaatcacatagttcagtgtaattataagtgtcggtgtcagacgcaacacgtgtccgacaccgggacacgccttaaccgaggagtgtccatgcttcat 20679337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 28745557 - 28745628
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| |||||||||||||||| |||| | ||| || ||| |||| || ||| |||||||||||||||||||    
T  28745557 gtgtcggtgtcggacacgacacctgtccgtcaccgagacaagtctaattcaaggagtgtccgtgcttcatag 28745628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 36450793 - 36450694
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| ||||||||||| | ||||  |||||||||||||| |||||| |||||    ||||| || |||| | ||||||| |||||||||||    
T  36450793 aaaatcacagaattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 13844637 - 13844591
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacac 74  Q
    ||||||||||| |||  |||||||||||||||||| |||||||||||    
T  13844637 agaaaatcacataattgagtgtaattatatgtgtcggtgtcggacac 13844591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 18964251 - 18964309
Alignment:
Q  71 acacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||||| ||||||| ||||| ||||||| | ||||||| |||||||||||    
T  18964251 acacgacacctgtctaacacggagacacgccttatccgaggagtgtctgtgcttcatag 18964309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 34897103 - 34897149
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacac 74  Q
    ||||||||||| ||| |||||||||||||||||||  ||||||||||    
T  34897103 agaaaatcacataattcagtgtaattatatgtgtcgatgtcggacac 34897149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 8343381 - 8343446
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||||||||||||||| ||||| |  ||||| || |||| ||||||||| |||||||||||    
T  8343381 gtgtccgacacgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 24413580 - 24413499
Alignment:
Q  48 gtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| |||||||||||||||||||  ||||||  |||  |  |||||||| |||| |  ||||||||||||||||||    
T  24413580 gtaattataagtgtcagtgtcggacacgatgcgtgtccaacagcgggacacgtctaatccgagaagtgtccgtgcttcatag 24413499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 29447109 - 29447040
Alignment:
Q  59 tgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    |||| ||||||||||||||| |||||||||||    ||||| || |||| | ||||||||||||||||||    
T  29447109 tgtcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcata 29447040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 31109559 - 31109463
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgctt 124  Q
    ||||||||| | ||| |||| ||| ||||||||||||||||||||| |   ||||| |||||| |  ||||| || |||| | ||||||||||||||    
T  31109559 agaaaatcaaacaattcagtctaactatatgtgtcagtgtcggacatgtgtcgtgtatgacactgggacacgcctaatccgaggagtgtccgtgctt 31109463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 31236618 - 31236570
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacga 76  Q
    ||||||||||| ||| || |||||||||||||||| ||| |||||||||    
T  31236618 agaaaatcacataattcaatgtaattatatgtgtcggtgacggacacga 31236570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 33001328 - 33001229
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| |||  | |||||||||||||||| ||||||||||||||||||||||||||| |||| ||| || |||||||||||||  |||||||||||    
T  33001328 aaaatcacataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgtctgacaccgaaatacgcctaatccaaagagtgtttgtgcttcatag 33001229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 13789174 - 13789273
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||  | ||| ||||| ||| |||||| ||||||||||||    
T  13789174 aaaatcataaaatgcagtgtaattatatgtatcaatgtcggacatgacacgtgtctgacatggggatacgccttattcaaggagtgttcgtgcttcatag 13789273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 13797793 - 13797892
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||  | ||| ||||| ||| |||||| ||||||||||||    
T  13797793 aaaatcataaaatgcagtgtaattatatgtatcaatgtcggacatgacacgtgtctgacatggggatacgccttattcaaggagtgttcgtgcttcatag 13797892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 18367854 - 18367966
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg-----------gacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgt 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||           |||||||||| ||||||||||||  ||||| ||||||||| ||||||    
T  18367854 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcggtgtcagacacgacacatgtctgacacggggacacgccttatccaaggagtgt 18367953  T
Q  117 ccgtgcttcatag 129  Q
    |||||||||||||    
T  18367954 ccgtgcttcatag 18367966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 9658897 - 9658998
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtctta-tccaaagagtgtccgtgcttca 126  Q
    ||||||||||| ||| |||||||||||||| |||| ||||  ||||||||||||||||||||| | |||||| || | ||||| ||||||||||||||||    
T  9658897 agaaaatcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtctgacaccggaacacgcctaattccaaggagtgtccgtgcttca 9658996  T
Q  127 ta 128  Q
    ||    
T  9658997 ta 9658998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 34595154 - 34595254
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| ||||||||||| | ||||| ||||||||||||||||||||||||||| |  ||||  || |||| | |||||||||||||||||||    
T  34595154 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 34595253  T
Q  130 a 130  Q
    |    
T  34595254 a 34595254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 7740660 - 7740712
Alignment:
Q  29 gaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgt 81  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  7740660 gaaaatcacaaaattgagtgtaattatatgtgtcagtgtcggacacgacacgt 7740712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 16488631 - 16488519
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg-----------gacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgt 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||           ||||||||||||||||| |||||  ||||| ||||||||| || |||    
T  16488631 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgt 16488532  T
Q  117 ccgtgcttcatag 129  Q
     ||||||||||||    
T  16488531 tcgtgcttcatag 16488519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 17327696 - 17327590
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg-----gacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgc 122  Q
    ||||||||||| |||  ||||||| |||||||||||||||||     ||||||||||||||||||||| |  ||||| || |||| | ||||||||||||    
T  17327696 agaaaatcacataatttagtgtaactatatgtgtcagtgtcgtgtcggacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgc 17327597  T
Q  123 ttcatag 129  Q
    |||||||    
T  17327596 ttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 13360413 - 13360313
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| |||||||||||||||| || ||||| ||||| |||  |||| ||||| || ||||| || |||| |||||||||||||||||||    
T  13360413 agaaaatcacataattcagtgtaattatatgtttcggtgtcagacacaaca-atgtccgacactgagacacgcctaatccgaagagtgtccgtgcttcat 13360315  T
Q  128 ag 129  Q
    ||    
T  13360314 ag 13360313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 32978923 - 32978842
Alignment:
Q  45 agtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttca 126  Q
    |||||||||| | ||||| |||||||||||||||| |||| ||||| |  |||||||| |||||| ||||||||||||||||    
T  32978923 agtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 19040370 - 19040421
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacac 79  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  19040370 agaaaatcacataattcagtgtaattatatgtgtctgtgtcggacacgacac 19040421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 24645501 - 24645600
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| |||| || ||| | ||||| ||||| ||||||||||||||| |||||  | |||||||| |||| ||||||||| |||||||||||    
T  24645501 aaaatcacataattcagtatagttacaagtgtcggtgtcagacacgacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcatag 24645600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 28152118 - 28152217
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| ||||||||||| | ||||| ||||||||||||||||||||| ||||| |  ||| | || |||| | |||||| ||||||||||||    
T  28152118 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 17841628 - 17841530
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    ||||||||| |||  |||||||||| | ||| | ||||||||||||||| ||||| ||||| || ||||| || |||| | ||||||||||||||||||    
T  17841628 aaaatcacataatttagtgtaattacaagtgacggtgtcggacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 7377997 - 7378101
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| || |||||||||||||||| ||||||||||||||| |  || ||||| |  ||||| || |||  |  ||||||||||||||||    
T  7377997 agaaaatcacataattcaatgtaattatatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttcat 7378096  T
Q  128 agaat 132  Q
    |||||    
T  7378097 agaat 7378101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 8101105 - 8101205
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||| | ||| |||||||||||||||||||||||||  | || |||| |||| |||| ||||||||||||  |||||||| ||||  || |||||||    
T  8101105 aaaatcatataatccagtgtaattatatgtgtcagtgtcaaatacaacacatgtccgacatggaaacacgtctagtccaaagaatgtctatggttcatag 8101204  T
Q  130 a 130  Q
    |    
T  8101205 a 8101205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 7265634 - 7265535
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||| | || |||| ||||| | || | | || |||| | ||| |||||||||||||    
T  7265634 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaatacatgtccgacaccggaatatgcctaatccgaggagcgtccgtgcttcat 7265535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 12696383 - 12696446
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||||||||||||||||||| |  ||||  ||||||||| ||||||| |||||||||    
T  12696383 gtgtcggacacgacacgtgtctgacaccgggacacaccttatccaaggagtgtctgtgcttcat 12696446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 30851637 - 30851676
Alignment:
Q  47 tgtaattatatgtgtcagtgtcggacacgacacgtgtctg 86  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  30851637 tgtaattatatgtgtcggtgtcggacacgacacgtgtctg 30851676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 7996419 - 7996325
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttca 126  Q
    ||||||||| | ||| ||||||||||||||| ||| ||||||    |||||||||||| ||||||  ||||| || |||||| |||| |||||||||||    
T  7996419 agaaaatcatataattcagtgtaattatatgcgtcggtgtcg----cgacacgtgtctaacacggggacacgcctaatccaaggagtctccgtgcttca 7996325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 8022382 - 8022476
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttca 126  Q
    ||||||||| | ||| ||||||||||||||| ||| ||||||    |||||||||||| ||||||  ||||| || |||||| |||| |||||||||||    
T  8022382 agaaaatcatataattcagtgtaattatatgcgtcggtgtcg----cgacacgtgtctaacacggggacacgcctaatccaaggagtctccgtgcttca 8022476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 32511707 - 32511606
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| ||||||||||||| ||||  |||||||| ||||||  |||||||||  | | |||| || |||  | |||||||||||||||||    
T  32511707 agaaaatcacataattcagtgtaattataagtgttggtgtcggatacgacatatgtctgacatcggagcacgcctaatcggaggagtgtccgtgcttcat 32511608  T
Q  128 ag 129  Q
    ||    
T  32511607 ag 32511606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 6898305 - 6898221
Alignment:
Q  45 agtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||||||| | ||||| |||||||||||||  ||||||  |||| |||||||| || |||| | |||||| ||||||||||||    
T  6898305 agtgtaattacaagtgtcggtgtcggacacgaagcgtgtccaacaccgaaacacgcctaatccgatgagtgttcgtgcttcatag 6898221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 8777012 - 8776908
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacga-----cacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgctt 124  Q
    ||||||||||||| ||||||||||| | ||||  |||||||||||||     |||||||| ||||| || ||||  || |||| | ||||||||||||||    
T  8777012 aaaatcacaaaattcagtgtaattacaagtgttggtgtcggacacgacacgacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgctt 8776913  T
Q  125 catag 129  Q
    |||||    
T  8776912 catag 8776908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 7977869 - 7977770
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||| ||| ||||||||||| | ||||| ||||||||||| |||  |||| ||||  |||||||| || ||| || |||||| ||||||||||||    
T  7977869 aaaattacataattcagtgtaattacaagtgtcggtgtcggacacaacatatgtccgacaacgaaacacgcctaatctaaggagtgttcgtgcttcatag 7977770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 16766756 - 16766827
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||||||||||| ||||||||| ||||| |  ||||| || |||| |||| ||||||||||||||||    
T  16766756 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgcttcatag 16766827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 4388103 - 4388144
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg 69  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||    
T  4388103 agaaaatcacataatccagggtaattatatgtgtcagtgtcg 4388144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 9025535 - 9025494
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg 69  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||    
T  9025535 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 9025494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 9629448 - 9629513
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||||| ||| ||||| ||||| || |||||||| |||| | |||||||| ||||||||||    
T  9629448 gtgtcggacacaacatgtgtccgacactgagacacgtctaatccgaggagtgtccatgcttcatag 9629513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 28715315 - 28715368
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgt 83  Q
    ||||| ||| ||| ||||||||||| | ||||| ||||||||||||||||||||    
T  28715315 aaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgt 28715368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 29020932 - 29020985
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgt 83  Q
    |||||| || ||| ||||||||||||| ||||  ||||||||||||||||||||    
T  29020932 aaaatcgcataattcagtgtaattataggtgtttgtgtcggacacgacacgtgt 29020985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 31384983 - 31385048
Alignment:
Q  63 agtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    ||||| ||||||||||||||||  |||| |  ||||| || |||||| ||||||||||||||||||    
T  31384983 agtgttggacacgacacgtgtcctacaccgggacacgcctaatccaaggagtgtccgtgcttcata 31385048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 31579266 - 31579212
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtc 84  Q
    ||||||||||| ||| ||||||||||||  ||||| |||||||||||||||| ||||    
T  31579266 agaaaatcacataattcagtgtaattat--gtgtcggtgtcggacacgacacatgtc 31579212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 4877982 - 4878061
Alignment:
Q  49 taattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||| | ||||| |||||||||||||||| |||| ||||| |  ||||| || |||| | |||||||||||||||||||    
T  4877982 taattacaagtgtcggtgtcggacacgacacatgtccgacacag-gacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 24138485 - 24138545
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgctt 124  Q
    |||| ||||| |||||||||||||||| || ||| | || |||| ||||||||||||||||    
T  24138485 gtgttggacatgacacgtgtctgacacagagacatgcctaatccgaagagtgtccgtgctt 24138545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 15680829 - 15680933
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| |||  |||||||||||| ||||| ||||||||||||||||||||| ||||| || |||||||| || | | |||||||||||||||||||    
T  15680829 aaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcatag 15680928  T
Q  130 aatct 134  Q
     ||||    
T  15680929 gatct 15680933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 18213074 - 18212973
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| |||  |||||||||||||||||| |||||||||||||| | | ||||||||||  ||||| ||||||| | ||||||| |||||||||    
T  18213074 agaaaatcacataatttagtgtaattatatgtgtcggtgtcggacacgacccctttctgacacggggacacgccttatccgaggagtgtctgtgcttcat 18212975  T
Q  128 ag 129  Q
    ||    
T  18212974 ag 18212973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 39138462 - 39138560
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttca 126  Q
    ||||||||||| ||| |||||||||||||| |||| ||||||||||||| || ||||| ||||||  ||||| ||||||| |||||| || ||||||||    
T  39138462 agaaaatcacataattcagtgtaattatatatgtcggtgtcggacacgatacatgtctaacacggggacacgccttatcccaagagtatctgtgcttca 39138560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 22885002 - 22885054
Alignment:
Q  131 atctactcaatagataaaacttggacaaaacaaagtatatgcaaaatcagaac 183  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  22885002 atctactcaatagataaaacttggacaaagtaaagtatatgcaaaatcagaac 22885054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 22803682 - 22803770
Alignment:
Q  162 aaagtatatgcaaaatcagaacaaannnnnnnaatgagaaaatgctttcatgtatctatttaattatttactcaaacatgatttcactt 250  Q
    ||||||||||||||||||||| |||       ||||| |||| ||||||||||||||||| |||||| ||||||| |||||||||||||    
T  22803682 aaagtatatgcaaaatcagaagaaaagagtttaatgaaaaaaagctttcatgtatctattaaattatctactcaatcatgatttcactt 22803770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 18035902 - 18035806
Alignment:
Q  31 aaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    |||||||| ||| ||| ||||||| ||||||||||||  || | ||||| |||||||||||| ||||||||| |||| | ||||||||||||||||||    
T  18035902 aaatcacataattcagcgtaattacatgtgtcagtgtgagataggacacatgtctgacacgg-aacacgtctaatccgaggagtgtccgtgcttcata 18035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 20549809 - 20549909
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||  ||| ||||||||||||||||||| ||||||||||| |||| |||| ||||  || ||||| || |||| | ||||| |||||||||||    
T  20549809 agaaaatcacgtaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttcat 20549908  T
Q  128 a 128  Q
    |    
T  20549909 a 20549909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 22870180 - 22870268
Alignment:
Q  162 aaagtatatgcaaaatcagaacaaannnnnnnaatgagaaaatgctttcatgtatctatttaattatttactcaaacatgatttcactt 250  Q
    ||||||||||||||||||||| |||       ||||| ||||  |||||||||||||||| |||||| ||||||| |||||||||||||    
T  22870180 aaagtatatgcaaaatcagaagaaaagagtttaatgaaaaaaaactttcatgtatctattaaattatctactcaatcatgatttcactt 22870268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 2334314 - 2334379
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||||||||||||| |||| ||||| ||||||||||| |||| | ||||||||||| |||||||    
T  2334314 gtgtcggacacgacacatgtccgacactgaaacacgtctaatccgaggagtgtccgtgtttcatag 2334379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 4794954 - 4795018
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    |||||||||||||||||| ||||||||  |||||||||| ||||||  |||||| ||||||||||    
T  4794954 gtgtcggacacgacacgtatctgacacctaaacacgtctaatccaagaagtgtctgtgcttcata 4795018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 22810159 - 22810195
Alignment:
Q  258 aacatgattatagtttgtgaatgaataatgcttctgt 294  Q
    |||||||||||||||||||||||||||||||||||||    
T  22810159 aacatgattatagtttgtgaatgaataatgcttctgt 22810195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 22829409 - 22829465
Alignment:
Q  194 aatgagaaaatgctttcatgtatctatttaattatttactcaaacatgatttcactt 250  Q
    |||||||||||||||||||||| ||||| || ||||||||||| ||||| |||||||    
T  22829409 aatgagaaaatgctttcatgtaactattaaactatttactcaagcatgaattcactt 22829465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 25481922 - 25482022
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| ||||||||||| | ||||  ||||||||||||| | ||||| ||||  ||||||||  | || |||||||| ||||||||||||||    
T  25481922 aaaatcacataattcagtgtaattacaagtgttggtgtcggacacgatatgtgtccgacattgaaacacgcttaattcaaagagtatccgtgcttcatag 25482021  T
Q  130 a 130  Q
    |    
T  25482022 a 25482022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 32287504 - 32287404
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| ||||| || |||||||||| |||||||||| |||| ||||| ||||| |  ||||  || |||| | |||||||||||||||||    
T  32287504 agaaaatcacataattcagtgcaagtatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcat 32287405  T
Q  128 a 128  Q
    |    
T  32287404 a 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 9482952 - 9483003
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacac 79  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||    
T  9482952 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacgcgacac 9483003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 21880170 - 21880272
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||| ||| ||| ||||||||||| | ||||| |||||||||||||||| |||| |||||    ||||| || |||| |  ||||||||||||||||    
T  21880170 agaaaattacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcat 21880269  T
Q  128 aga 130  Q
    |||    
T  21880270 aga 21880272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 3554528 - 3554447
Alignment:
Q  47 tgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    ||||||||||  |||| |||||||||||||||| | ||| |||| || |||||||| || | ||||||||| ||||||||||    
T  3554528 tgtaattatagatgtcggtgtcggacacgacacatatctaacactgagacacgtctaattcgaagagtgtctgtgcttcata 3554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 5409836 - 5409771
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||||||||||||||| ||||| |  ||||| || |||| | |||||||||||||||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 9778559 - 9778624
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||||| ||||||||| ||||| |  ||||| || |||||| |||||||||||||||||||    
T  9778559 gtgtcggacacaacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcatag 9778624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 10359633 - 10359717
Alignment:
Q  44 cagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    ||||||||||||| |||||  ||||||| |||||  ||||| ||||| || |||||||| |||| ||  ||||||||||||||||    
T  10359633 cagtgtaattataggtgtcgatgtcggatacgacttgtgtccgacaccgagacacgtctaatccgaaaggtgtccgtgcttcata 10359717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 13770750 - 13770810
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgctt 124  Q
    ||||||||||| ||||||||| ||||| | |||||| || |||| ||||||||||||||||    
T  13770750 gtgtcggacacaacacgtgtccgacaccggaacacgcctaatccgaagagtgtccgtgctt 13770810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 21864843 - 21864927
Alignment:
Q  45 agtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||||||| | |||||  |||||||||||||||||||| ||||| |  |||||||| || | | ||||||| |||||||||||    
T  21864843 agtgtaattacaagtgtcgctgtcggacacgacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcatag 21864927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 22831546 - 22831578
Alignment:
Q  258 aacatgattatagtttgtgaatgaataatgctt 290  Q
    |||||||||||||||||||||||||||||||||    
T  22831546 aacatgattatagtttgtgaatgaataatgctt 22831578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 22887676 - 22887732
Alignment:
Q  194 aatgagaaaatgctttcatgtatctatttaattatttactcaaacatgatttcactt 250  Q
    |||||||||||| ||| ||||| ||||| ||  ||||||||||||||||||||||||    
T  22887676 aatgagaaaatgattttatgtaactattaaaccatttactcaaacatgatttcactt 22887732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 43027508 - 43027404
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg-----gacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgctt 124  Q
    ||||||||| |||||||||||| || | ||||| ||||||     ||||||||||||||| ||||| |  ||||| || |||| | ||||||||||||||    
T  43027508 aaaatcacataatgcagtgtaaatacaagtgtcggtgtcgtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgctt 43027409  T
Q  125 catag 129  Q
    |||||    
T  43027408 catag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 5835265 - 5835324
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctga 87  Q
    ||||||| ||| ||| ||||||||||||||||||| ||||| |||| |||| ||||||||    
T  5835265 agaaaataacataattcagtgtaattatatgtgtcggtgtcagacatgacatgtgtctga 5835324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 41020516 - 41020607
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtg 121  Q
    ||||||||| |||  |||||||||||||| ||| |||| | ||||||||| | ||| |||| |  |||||||| ||||||||| ||||||||    
T  41020516 aaaatcacataatttagtgtaattatatgcgtcggtgttgaacacgacacatatctaacaccgggacacgtctaatccaaagaatgtccgtg 41020607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 598245 - 598327
Alignment:
Q  47 tgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||| || ||||| ||||| ||||||||||||||| ||||| |  ||||| || |||| |  ||||||||||||||||||    
T  598245 tgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 5548694 - 5548735
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg 69  Q
    ||||||||| | ||| ||||||||||||||||||||||||||    
T  5548694 agaaaatcaaataattcagtgtaattatatgtgtcagtgtcg 5548735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 11665439 - 11665370
Alignment:
Q  59 tgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    |||| |||||| |||||||||||||| ||||| ||||||| ||| || | | || |||||||||||||||    
T  11665439 tgtcggtgtcgaacacgacacgtgtccgacaccgaaacacatctaatacgaggaatgtccgtgcttcata 11665370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 22602751 - 22602710
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg 69  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||    
T  22602751 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 22602710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 22868060 - 22868097
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagt 65  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  22868060 agaaaatcacataattcagtgtaattatatgtgtcagt 22868097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 26733324 - 26733393
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacg 99  Q
    ||||||||| ||| |||| |||||| ||||||| |||||||||||||| | |||| || |||| ||||||    
T  26733324 aaaatcacataattcagtctaattaaatgtgtcggtgtcggacacgacgcatgtccgatacgggaacacg 26733393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 32308138 - 32308179
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg 69  Q
    ||||||||||| ||| |||||||||| |||||||||||||||    
T  32308138 agaaaatcacataattcagtgtaattgtatgtgtcagtgtcg 32308179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 640134 - 640182
Alignment:
Q  31 aaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacac 79  Q
    |||||||| ||| ||||||||||||||||||| ||||| || |||||||    
T  640134 aaatcacataattcagtgtaattatatgtgtcggtgtcagatacgacac 640182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 22484059 - 22484143
Alignment:
Q  44 cagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    |||| |||||||||||||| ||||| |||| ||||| |||| ||||  || ||| |||| |||| |  |||||||||||||||||    
T  22484059 cagtataattatatgtgtcggtgtcagacatgacacatgtccgacatcgagacatgtctgatccgagaagtgtccgtgcttcata 22484143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 22805824 - 22805856
Alignment:
Q  258 aacatgattatagtttgtgaatgaataatgctt 290  Q
    ||||||||||||||||| |||||||||||||||    
T  22805824 aacatgattatagtttgagaatgaataatgctt 22805856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 22840573 - 22840609
Alignment:
Q  258 aacatgattatagtttgtgaatgaataatgcttctgt 294  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  22840573 aacatgattatagtttgtgaataaatgatgcttctgt 22840609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 22842685 - 22842721
Alignment:
Q  258 aacatgattatagtttgtgaatgaataatgcttctgt 294  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  22842685 aacatgattattgtttgtgaatgaacaatgcttctgt 22842721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 22874305 - 22874361
Alignment:
Q  194 aatgagaaaatgctttcatgtatctatttaattatttactcaaacatgatttcactt 250  Q
    |||||| ||| ||||| ||||||||||| || || |||||||||||||| |||||||    
T  22874305 aatgagtaaaagctttgatgtatctattaaactacttactcaaacatgaattcactt 22874361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 22886010 - 22886046
Alignment:
Q  258 aacatgattatagtttgtgaatgaataatgcttctgt 294  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  22886010 aacatgattatagtttgagaatgaatcatgcttctgt 22886046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 24339701 - 24339773
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcataga 130  Q
    ||||| |||||||||||||||||| || ||||| |  ||||| || |||| | ||||| ||||||||||||||    
T  24339701 gtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttcataga 24339773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 30099061 - 30098982
Alignment:
Q  46 gtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttc 125  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||  ||||| ||||||||| |||||| ||||||||    
T  30099061 gtgtaattatatgtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtgcttc 30098982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 6401557 - 6401627
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    |||||||||||||||||||||||||||||||||||  | ||| ||||||||| ||||||||||||||||||    
T  6401557 gtgtcagtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 6401627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 42029770 - 42029871
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| || ||||||||||||| || |||||||||||||||| |||||| |||| | ||||| ||||||| | |||||||||||| ||||    
T  42029770 agaaaatcacataattcaatgtaattatatgtatcggtgtcggacacgacacatgtctgtcacgtagacacgccttatccgaggagtgtccgtgcatcat 42029869  T
Q  128 ag 129  Q
    ||    
T  42029870 ag 42029871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 21576784 - 21576685
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| ||||||||||| | |||||  |||||||||||||||||||||||||| |  ||||| || |||| | |||||||||||||||||||    
T  21576784 aaaatcacataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 21814279 - 21814391
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgt-----------cggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgt 116  Q
    ||||||||||||||||||||||||||||||||||| ||||           ||||||||||||||||||| |||||  ||||| ||||||||| || |||    
T  21814279 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgt 21814378  T
Q  117 ccgtgcttcatag 129  Q
     ||||||||||||    
T  21814379 tcgtgcttcatag 21814391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 28588715 - 28588614
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| ||||||||||||| ||||| |||||||||||||||| | ||||||||    |||||  | |||| |||||||||| ||||||||    
T  28588715 agaaaatcacataattcagtgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatccgaagagtgtccatgcttcat 28588616  T
Q  128 ag 129  Q
    ||    
T  28588615 ag 28588614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 30502429 - 30502330
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||  ||| ||||||||||||||||||| |||||||||||||||| |||| ||||| |  ||| | || |||||| || ||| ||||||||||    
T  30502429 agaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 30542772 - 30542673
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||  ||| ||||||||||||||||||| |||||||||||||||| |||| ||||| |  ||| | || |||||| || ||| ||||||||||    
T  30542772 agaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30542673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 21191095 - 21190998
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||| ||| ||||||||||| | ||||| ||||||||||| ||||||||| ||| | |  ||||| || |||| | |||||||||||||||||    
T  21191095 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 16304438 - 16304366
Alignment:
Q  57 tgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| |||||||||||||||| | ||||| || |||||||| |||| | || ||||||||||||||||    
T  16304438 tgtgtcagtatcggacacgacacgtgcccgacaccgagacacgtctaatccgaggaatgtccgtgcttcatag 16304366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 18421882 - 18421826
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtc 84  Q
    ||||||||||| ||| ||||||||||||||||||| | |||||||||||||| ||||    
T  18421882 agaaaatcacataatccagtgtaattatatgtgtcggcgtcggacacgacacatgtc 18421826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 19453066 - 19452998
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttca 126  Q
    |||||| ||||||||||||||| ||||| ||||||| | ||| ||||||||| ||| ||||||||||||    
T  19453066 gtgtcaatgtcggacacgacacatgtctcacacggagatacgccttatccaaggagcgtccgtgcttca 19452998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 21522809 - 21522880
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||||||||||||||||||||| | ||| |  ||||| || ||||||||||||||||||| ||||||    
T  21522809 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21522880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 21533375 - 21533446
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||||||||||||||||||||| | ||| |  ||||| || ||||||||||||||||||| ||||||    
T  21533375 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21533446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 43564901 - 43565000
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| |||  |||||||||||| ||||| ||||||||||||||| ||||| ||| | |  ||||| || |||| |  ||||||||||||||||||    
T  43564901 aaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatag 43565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 26312803 - 26312849
Alignment:
Q  44 cagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    |||||||||||||||| || ||||||||||||| |||||||||||||    
T  26312803 cagtgtaattatatgtatcggtgtcggacacgatacgtgtctgacac 26312849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 32630757 - 32630715
Alignment:
Q  47 tgtaattatatgtgtcagtgtcggacacgacacgtgtctgaca 89  Q
    ||||||||||||||||||||||||| |||||||||||| ||||    
T  32630757 tgtaattatatgtgtcagtgtcggatacgacacgtgtccgaca 32630715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 40000561 - 40000493
Alignment:
Q  61 tcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| || ||||| ||| ||||||| || ||||||||||||  | |||||||||||||||||||    
T  40000561 tcagtgtcgtacgcgacatgtgcctgacaccgagacacgtcttatctgaggagtgtccgtgcttcatag 40000493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 23012430 - 23012387
Alignment:
Q  47 tgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||    
T  23012430 tgtaattatatgtgtcggtgttggacacgacacatgtctgacac 23012387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 39698600 - 39698671
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||||||||||||||| || || ||||| || ||||| || |||| | |||||||||||||||||||    
T  39698600 gtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 39698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 6770561 - 6770655
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| ||||||| ||||  |||||||||||||||||||||| ||||     | |  ||||| || |||| |||||||||||||||||||    
T  6770561 agaaaatcacataattcagtgtacttat--gtgtcagtgtcggacacgacacatgtc-----ctggtacacgcctaatccgaagagtgtccgtgcttcat 6770653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 3966521 - 3966562
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg 69  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||    
T  3966521 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcg 3966562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 15884008 - 15884057
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacac 79  Q
    ||||||||| ||| ||||||||||| | ||||| ||||||||||||||||    
T  15884008 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacac 15884057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 17123066 - 17123166
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| |||  |||  |||||||| |||| |||| |||||||| || |||| |||||||  ||||| || |||| | |||||||||||||||||    
T  17123066 agaaaatcacataatcaagtacaattatatatgtcggtgttggacacgaaacatgtccgacacgg-gacacgcctaatccgaggagtgtccgtgcttcat 17123164  T
Q  128 ag 129  Q
    ||    
T  17123165 ag 17123166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 39268613 - 39268541
Alignment:
Q  54 atatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttca 126  Q
    ||||||||| |||| |||||||||| ||||| ||||| |  ||||| || |||| | ||||||||||||||||    
T  39268613 atatgtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39758263 - 39758324
Alignment:
Q  1 cacgacaccgacacagctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtc 62  Q
    |||||||| |||||||||||       ||||||||||| ||| |||||||||||||||||||    
T  39758263 cacgacacggacacagctaaattttttagaaaatcacataattcagtgtaattatatgtgtc 39758324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 42893380 - 42893440
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||||||| ||| ||||||||||| | ||||| ||||| ||||| ||||||||| |||||    
T  42893380 aaaatcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacac 42893440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 5414213 - 5414101
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgt-----------gtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgt 116  Q
    ||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||| |  ||||  ||||||||| ||||||    
T  5414213 agaaaatcacaaaatgcagtgtaattatatgtatcggtgtcgtgtcagtgtcggacacgacacgtgtctgacacagggacacaccttatccaaggagtgt 5414114  T
Q  117 ccgtgcttcatag 129  Q
    |||||||||||||    
T  5414113 ccgtgcttcatag 5414101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 35161054 - 35161155
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||| ||| ||||||||||||| || |||| ||||||||||||||||||| ||||| | |||||  || |||| || ||||||||||||||||    
T  35161054 agaaaatcacataattcagtgtaattataagtatcagagtcggacacgacacgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttcat 35161153  T
Q  128 ag 129  Q
    ||    
T  35161154 ag 35161155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 19097935 - 19097835
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||||  ||| |||| ||||||||| |||| |||||| ||| ||||||||||||||||||  ||||| |||| |||||||||||| |||||||||    
T  19097935 agaaaatcacgtaattcagtataattatatttgtcggtgtcgaacatgacacgtgtctgacacggggacacgcctta-ccaaagagtgtctgtgcttcat 19097837  T
Q  128 ag 129  Q
    ||    
T  19097836 ag 19097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 23293025 - 23292926
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| |||| |||||| | ||||| ||||||||||||||||||||| ||||| |  ||||| || |||| | |||||||||||||||||||    
T  23293025 aaaatcacataattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 49431046 - 49431146
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| ||||||||||| | ||||| |||||||||||||||||||||  |||| |  ||||| ||||||| | |||||||| ||||| ||||    
T  49431046 aaaatcacataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtccatgctttatag 49431145  T
Q  130 a 130  Q
    |    
T  49431146 a 49431146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 30982878 - 30982808
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    ||||| ||||| ||||||||||||||| ||||| |  ||||| || |||||||||||||||||||||||||    
T  30982878 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcata 30982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 54580062 - 54580008
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtc 84  Q
    ||||||||| ||| ||||||||||||| ||||| |||||||||||||||||||||    
T  54580062 aaaatcacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtc 54580008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 2361999 - 2361914
Alignment:
Q  45 agtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcataga 130  Q
    |||||||||| | ||||| |||||||||||||| |||||||||||| || ||||  || |||  | ||||||||||||||||||||    
T  2361999 agtgtaattaaaagtgtcggtgtcggacacgactcgtgtctgacaccgagacacacctaatctgacgagtgtccgtgcttcataga 2361914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 36635342 - 36635450
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtc------agtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtg 121  Q
    ||||||||||| ||| ||||||||||||||||||       |||||| ||||||||||| ||| ||||| |  ||||| || |||| |||||||||||||    
T  36635342 agaaaatcacataattcagtgtaattatatgtgttcgtgtgagtgtcagacacgacacgcgtcagacaccgggacacgcctaatccgaagagtgtccgtg 36635441  T
Q  122 cttcataga 130  Q
    |||||||||    
T  36635442 cttcataga 36635450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 34306843 - 34306743
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||| | |||| |||||||||| | ||||| ||||||||||||||||||||| ||||| || ||||| || |||  | || ||| ||||||||||||    
T  34306843 aaaatcagataatgtagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttcatag 34306744  T
Q  130 a 130  Q
    |    
T  34306743 a 34306743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 10499311 - 10499260
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacac 79  Q
    ||||||||||| |||  |||||||||||||||||||||||||||| ||||||    
T  10499311 agaaaatcacataatttagtgtaattatatgtgtcagtgtcggacccgacac 10499260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 28964287 - 28964188
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| ||||||||||| | ||||| |||||||||||||||| | || ||||| |  ||||| || |||| | |||||||| ||||||||||    
T  28964287 aaaatcacataattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcatag 28964188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 8402783 - 8402721
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||||||| | ||| |||||||||||||||| |||||||| |||||||||| |||| |||||    
T  8402783 agaaaatcatataattcagtgtaattatatgtctcagtgtcagacacgacacttgtccgacac 8402721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 12323968 - 12324038
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    ||||| |||||||||| ||||||||| || ||||| |||||  ||||||| | ||||||||||||||||||    
T  12323968 gtgtcggtgtcggacatgacacgtgtgtggcacgggaacacaccttatccgaggagtgtccgtgcttcata 12324038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 24613700 - 24613630
Alignment:
Q  59 tgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||| ||||| |||||||||||||||||||||    |||||||| |||| | |||||||||||||||||||    
T  24613700 tgtcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcatag 24613630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 36509131 - 36509074
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctga 87  Q
    ||||||||| |||  |||||||||||||||||| | ||||||| ||||||||||||||    
T  36509131 aaaatcacataatcaagtgtaattatatgtgtcggcgtcggacgcgacacgtgtctga 36509074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 40179675 - 40179626
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacac 79  Q
    ||||||||| ||| ||||||||||||||| ||| ||||||||||||||||    
T  40179675 aaaatcacataattcagtgtaattatatgcgtcggtgtcggacacgacac 40179626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 4672125 - 4672025
Alignment:
Q  29 gaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    |||||| ||| ||| |||||||  |||||||||| |||||||| || | ||||||  ||||| | |||| |||| |||||| ||||||| ||||||||||    
T  4672125 gaaaattacataattcagtgtagctatatgtgtcggtgtcggatacaaaacgtgttcgacactggaacatgtctaatccaaggagtgtctgtgcttcata 4672026  T
Q  129 g 129  Q
    |    
T  4672025 g 4672025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 12797377 - 12797317
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||||||| ||| ||||||||||| | ||||| ||||||||||||| || ||||||||||    
T  12797377 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtctgacac 12797317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 16073414 - 16073513
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||| || ||| ||||||||||| | ||||| ||||||||||||| || |||| |||||  | ||||| || |||| | |||||||| ||||||||||    
T  16073414 aaaatcgcataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcatag 16073513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 35158024 - 35157925
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| |||  |||||||||||| ||||| ||||| |||||||||| ||||  |||| | ||||||  | |||| |  ||||||||||||||||||    
T  35158024 aaaatcacataatttagtgtaattataagtgtcggtgtctgacacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttcatag 35157925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 46083991 - 46083920
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||||| |||||||||||||||||||||| |||  ||||| |||||   | |||||||| ||||||||||    
T  46083991 gtgtcagtatcggacacgacacgtgtctgacgcggggacacgccttataagaggagtgtccatgcttcatag 46083920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 8423759 - 8423709
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgaca 78  Q
    ||||||||||| ||| |||||||||||||  |||| |||||||||||||||    
T  8423759 agaaaatcacataattcagtgtaattataaatgtcggtgtcggacacgaca 8423709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 20950458 - 20950368
Alignment:
Q  38 aaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    ||||| ||||||||||||||||||| ||||| ||||||| || |||   |||| ||||||||  | |||||| ||||| |||| |||||||    
T  20950458 aaaattcagtgtaattatatgtgtcggtgtcagacacgatacatgttcaacacagaaacacgcataatccaaggagtgcccgtacttcata 20950368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 38847037 - 38846991
Alignment:
Q  44 cagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||||||||| | |||||||||||||| |||||||||||| |||||    
T  38847037 cagtgtaattacaagtgtcagtgtcggatacgacacgtgtccgacac 38846991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 21945523 - 21945623
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||| ||| ||| ||||||||||| | ||||| |||||||||| ||||| |||| ||||| | |||||| || |||| | |||||||  |||||| |||    
T  21945523 aaaatgacataattcagtgtaattacaagtgtcggtgtcggacatgacacatgtccgacaccgcaacacgcctaatccgaggagtgtctatgcttcttag 21945622  T
Q  130 a 130  Q
    |    
T  21945623 a 21945623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 23861445 - 23861369
Alignment:
Q  53 tatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||||||| ||||| || ||||||| |||||| |||  | ||||| || || |||||||||| ||||||||||||    
T  23861445 tatatgtgtcggtgtcagatacgacacatgtctgtcaccaagacacgcctaattcaaagagtgttcgtgcttcatag 23861369  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 29205464 - 29205524
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||||||| ||| ||||||||||| | ||||| |||| ||||||||||| |||| |||||    
T  29205464 aaaatcacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtccgacac 29205524  T

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Target: scaffold0623 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 6037 - 5926
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcgga-----------cacgacacgtgtctgacacggaaacacgtcttatccaaagagtgt 116  Q
    ||||||||||||||||||||||||||||||||||| |||||| |           ||||||||||||||||||| || ||||| ||||||||| ||||||    
T  6037 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtatcggtgtcgaacacgacacgtgtctgacacagagacacgccttatccaaggagtgt 5938  T
Q  117 ccgtgcttcata 128  Q
    |||||| |||||    
T  5937 ccgtgcctcata 5926  T

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Target: scaffold0652 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 501 - 403
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcata 128  Q
    ||||||||||||| ||||||||||| | ||||| |||||||||||||| |||||| ||||| |  ||||  || |||| | ||||||||||||||||||    
T  501 aaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

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Target: scaffold0083 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 45555 - 45469
Alignment:
Q  44 cagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcataga 130  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||| |  ||| | || ||||||||| ||| |||||||||||||    
T  45555 cagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgcgacatgcctaatccaaagattgtacgtgcttcataga 45469  T

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Target: scaffold0361 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 14550 - 14649
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    ||||||||| ||| ||||||||||| | |||   ||||||||||||||||||||| ||||| || ||||| || ||| || |||||| ||||||||||||    
T  14550 aaaatcacataattcagtgtaattacaagtg---gtgtcggacacgacacgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttcatag 14646  T

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Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 8833 - 8918
Alignment:
Q  45 agtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcataga 130  Q
    |||||||||| | ||||| ||||||||||||||||||||| ||||| || ||||| || |||  | |||| |||||||||||||||    
T  8833 agtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcataga 8918  T

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Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 90861 - 90962
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||||||| | ||| |||||||||||||| ||||  |||| ||||| ||||||||| |||||  ||||||| || |||||| ||||||  |||||||||    
T  90861 agaaaatcatataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacaccaaaacacgcctaatccaatgagtgtatgtgcttcat 90960  T
Q  128 ag 129  Q
    ||    
T  90961 ag 90962  T

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Target: scaffold0050 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 70298 - 70358
Alignment:
Q  30 aaaatcacaaaatgcagtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacac 90  Q
    ||||| ||| ||| ||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  70298 aaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacac 70358  T

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Target: scaffold0116 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 9916 - 9957
Alignment:
Q  28 agaaaatcacaaaatgcagtgtaattatatgtgtcagtgtcg 69  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  9916 agaaaatcataaaatgcagtgtaattatatgtgtcggtgtcg 9957  T

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Target: scaffold0475 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 3343 - 3427
Alignment:
Q  45 agtgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||||||| | |||||||||||||||| ||||||||   ||||| |  ||||| || |||| | |||||||||||||||||||    
T  3343 agtgtaattacaagtgtcagtgtcggacaagacacgtggtggacactgggacacgcctaatccgaggagtgtccgtgcttcatag 3427  T

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Target: scaffold0512 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 5058 - 4976
Alignment:
Q  47 tgtaattatatgtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcatag 129  Q
    |||||||| | ||||| ||||||||||||||||||||| ||||  || ||| | || |||| | ||||||| |||||||||||    
T  5058 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacattgagacatgcctaatccgaggagtgtctgtgcttcatag 4976  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 241659 - 241725
Alignment:
Q  64 gtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcataga 130  Q
    ||||||||||||||||||||| ||||| |  ||||| || |||| |  |||||||||||||||||||    
T  241659 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcataga 241725  T

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Target: scaffold0306 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 13454 - 13523
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||| ||||||||||||||||| |||||||||    ||||  || |||||| |||||||||||||||||    
T  13454 gtgtcggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgcttcat 13523  T

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Target: scaffold0152 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 21873 - 21804
Alignment:
Q  58 gtgtcagtgtcggacacgacacgtgtctgacacggaaacacgtcttatccaaagagtgtccgtgcttcat 127  Q
    ||||| ||||||||||||||||| |||||||||    ||||  || |||||| |||||||||||||||||    
T  21873 gtgtcggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgcttcat 21804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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