View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19529_low_38 (Length: 300)
Name: NF19529_low_38
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_38 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 37503351 - 37503066
Alignment:
| Q |
1 |
ttgactagggcaaacataactcattttgttagcaacaatgtgatcaataaactcaaactagttaaagatgtatccgtcctagttagtgtatgagctacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37503351 |
ttgactagggcaaacataactcattttgttagcaacaatgtgataaataaactcaaactagttaaagatgtatccgtcctagttagtgtatgagctacct |
37503252 |
T |
|
| Q |
101 |
caatggtttgttctcaactctagagttactaaaattgaatacaaccaaaaggaatgtctacaatctgtaattatggcaccaaaatctaaggcatctctcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37503251 |
caatggtttgttctcaactctagagttactaaaattgaatataaccaaaaggaatgtctacaatctgtaattatggcaccaaaatctaaggcatctctcg |
37503152 |
T |
|
| Q |
201 |
taaaatatcaactaccttcttgactcaaaatccacattttccatttgatgctcatggctccacttgattgttcacaatgatccaca |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37503151 |
taaaatatcaactaccttcttgactcaaaatccacattttccatttgatggtcatggctccacttgattgctcacaatgatccaca |
37503066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University