View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_39 (Length: 280)
Name: NF19529_low_39
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_39 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 11890684 - 11890962
Alignment:
| Q |
1 |
ttagttagttagttacctggcactgaggttgagaagtggaatgtcgggtccgaaaaccaaggaggatttgatgagttttaaggttagcagacaaagattt |
100 |
Q |
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| T |
11890684 |
ttagttagttagttacctggcactgaggttgagaagtggaatgtcgggtccgaaaaccgaggaggatttgatgagttt-aaggttagcagacaaagattt |
11890782 |
T |
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| Q |
101 |
tcctgttggatcactttttacacttatgattgtgtagccataaccaacttgtgtttcttttgatggtgaatctgcaacagtttgggataagatgacaaaa |
200 |
Q |
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| T |
11890783 |
tcctgttggatcactttttacacttatgattgtgtagccataaccaacttgtgtttcttttgatggtgaatctgcaacagtttgggataagatgacaaaa |
11890882 |
T |
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| Q |
201 |
acattgaaacagaaagctagtatttgtagtagaatgtttctggttttagttcttggacttgtaaccattttgtctgtgtt |
280 |
Q |
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| T |
11890883 |
acattgaaacagaaagctagtagtggtagtagaatgttgctggttttagttcttggacttgtaaccattttgtttgtgtt |
11890962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 11903028 - 11903306
Alignment:
| Q |
1 |
ttagttagttagttacctggcactgaggttgagaagtggaatgtcgggtccgaaaaccaaggaggatttgatgagttttaaggttagcagacaaagattt |
100 |
Q |
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| T |
11903028 |
ttagttagttagttacctggcactgaggttgagaagtggaatgtcgggtccgaaaaccgaggaggatttgatgagttt-aaggttagcagacaaagattt |
11903126 |
T |
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| Q |
101 |
tcctgttggatcactttttacacttatgattgtgtagccataaccaacttgtgtttcttttgatggtgaatctgcaacagtttgggataagatgacaaaa |
200 |
Q |
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| T |
11903127 |
tcctgttggatcactttttacacttatgattgtgtagccataaccaacttgtgtttcttttgatggtgaatctgcaacagtttgggataagatgacaaaa |
11903226 |
T |
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| Q |
201 |
acattgaaacagaaagctagtatttgtagtagaatgtttctggttttagttcttggacttgtaaccattttgtctgtgtt |
280 |
Q |
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| T |
11903227 |
acattgaaacagaaagctagtagtggtagtagaatgttgctggttttagttcttggacttgtaaccattttgtttgtgtt |
11903306 |
T |
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