View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_4 (Length: 670)
Name: NF19529_low_4
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 24 - 670
Target Start/End: Complemental strand, 7038353 - 7037707
Alignment:
| Q |
24 |
cttctcaattatttaagcttacgaatctaaactgcaatatccagtggcaaaaattgagagctagatggctgaaggatatggggatgcaaacactaagtac |
123 |
Q |
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| T |
7038353 |
cttctcaattatttaagcttacgaatctaaactgcaatatccagtggcaaaaattgagagctagatggctgaaggatatggggatgcaaacactaagtac |
7038254 |
T |
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| Q |
124 |
tttcatgggtgtataaataagagaagaaaagaacatgaaattcttactttggagtggaatggcagaaggttgaatgaagcggacgacataaagaaagcca |
223 |
Q |
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| T |
7038253 |
tttcatgggtgtataaataagagaagaaaagaacatgaaattcttactttggagtggaatggcagaaggttgaatgaagcggacgacataaagaaagcca |
7038154 |
T |
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| Q |
224 |
tcgttgatcattttcagtgacacttctcagccaggggtaacagacttatcccgactaacataaacttaaaaagaattaatagtgaagacatgatggagtt |
323 |
Q |
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| T |
7038153 |
tcgttgatcattttcagtgacacttctcagccaggggtaacagacttatcccgactaacataaacttaaaaagaattaatagtgaagacatgatggagtt |
7038054 |
T |
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| Q |
324 |
agtgcgggaattttcataagcaaaatttcgcaaggtaatttggcagtgcgatagttctaaaagtccaagcccggatggtgtgaattttggcttgtgaaag |
423 |
Q |
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| T |
7038053 |
agtgcgggaattttcataagcaaaatttcgcaaggtaatttggcagtgcgatagttctaaaagtccaagcccggatggtgtgaattttggcttgtgaaag |
7037954 |
T |
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| Q |
424 |
aattttgggaagatgtcaaaactgatttcatgagagttatgaccaaatttcatgcaaatggtcggatagttaaaggggtgaattgttctttcattgtctt |
523 |
Q |
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| T |
7037953 |
aattttgggaagatgtcaaaactgatttcatgagagttatgaccaaatttcatgcaaatggtcggatagttaaaggggtgaattgttctttcattgtctt |
7037854 |
T |
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| Q |
524 |
aatcctaaagaaaaatccagggtatatgttggacttcaggcctatatccttgattgtgtgtatctacaaggttttagcaaaagtgttggctaatatatta |
623 |
Q |
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| T |
7037853 |
aatcctaaagaaaaatccagggtatatgttggacttcaggcctatatccttgattgtgtgtatctacaaggttttagcaaaagtgttggctaatatatta |
7037754 |
T |
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| Q |
624 |
gaaaaggtacccggtacagtcatatcagagacacagttggctttcat |
670 |
Q |
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| T |
7037753 |
gaaaaggtaaccggtacagtcatatcagagacacagttggctttcat |
7037707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 17256273 - 17256217
Alignment:
| Q |
381 |
taaaagtccaagcccggatggtgtgaattttggctt-gtgaaagaattttgggaaga |
436 |
Q |
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| T |
17256273 |
taaaagtccagggccggatggtgtgaattttggattcattaaagaattttgggaaga |
17256217 |
T |
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