View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_42 (Length: 255)
Name: NF19529_low_42
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 4742016 - 4742241
Alignment:
| Q |
13 |
gctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaaatagtctttctctttttaatttattggcaaatcgcaatggtatacaatc |
112 |
Q |
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| T |
4742016 |
gctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaaatagtctttctcttattaatttattggcaaatcgcaatggtatacaatc |
4742115 |
T |
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| Q |
113 |
acattttcatgtagattcagaaagttttatcaaaaaagtttaaaccaaagtaaaaattagacatggtctatgggtgtggaaaattcaagtgcttacgaac |
212 |
Q |
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| T |
4742116 |
acattttcatgtagattcagcaaattttatcaaaaaagtttaaaccaaagtaaagattagacatggtctatgggtgtggaaaattcaagtgcttacgaac |
4742215 |
T |
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| Q |
213 |
aagtttcaccgggtatatatggattg |
238 |
Q |
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| T |
4742216 |
aagtttcaccgggtatatatggattg |
4742241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 4717122 - 4717178
Alignment:
| Q |
174 |
catggtctatgggtgtggaaaattcaagtgcttacgaac-aagtttcaccgggtata |
229 |
Q |
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| T |
4717122 |
catggtctatgggtgtggaaaattcaagtgcttatgaacaaagtttcaccgggtata |
4717178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 4721188 - 4721238
Alignment:
| Q |
13 |
gctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaa |
63 |
Q |
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| T |
4721188 |
gctaccaaatcattctgttatcaataaatcacaaaagcctaatgaaacaaa |
4721238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 4721403 - 4721453
Alignment:
| Q |
13 |
gctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaa |
63 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
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| T |
4721403 |
gctaccaaatcattctgttatcaataaatcacaaaagcctaatgaaacaaa |
4721453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 4721618 - 4721668
Alignment:
| Q |
13 |
gctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaa |
63 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
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| T |
4721618 |
gctaccaaatcattctgttatcaataaatcacaaaagcctaatgaaacaaa |
4721668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 4741154 - 4741193
Alignment:
| Q |
174 |
catggtctatgggtgtggaaaattcaagtgcttacgaaca |
213 |
Q |
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| T |
4741154 |
catggtctatgggtgtggaaaattcaagtgattatgaaca |
4741193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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