View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_50 (Length: 221)
Name: NF19529_low_50
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 12183098 - 12182955
Alignment:
| Q |
15 |
aagaataaaaatactttaggtttaaaaaacaatgatataaaaatactttagtggtctagtgtaaaagaataaaaatattttaggtttaaaaatactttag |
114 |
Q |
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| T |
12183098 |
aagaataaaaatactttaggtttaaaaaacaatgatataaaaatactttagtggtctagtgtaaaagaataaaaatattttaggtttaaaaatactttag |
12182999 |
T |
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| Q |
115 |
gttttaaataatagcaactagtaaaaaacaataatagcaacttg |
158 |
Q |
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| T |
12182998 |
gttttaaataatagcaactactaaaaaacaataatagcaacttg |
12182955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 12427526 - 12427383
Alignment:
| Q |
15 |
aagaataaaaatactttaggtttaaaaaacaatgatataaaaatactttagtggtctagtgtaaaagaataaaaatattttaggtttaaaaatactttag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12427526 |
aagaataaaaatactttaggtttaaaaaacaatgatataaaaatactttagtggtctagtgtaaaagaataaaaatattttaggtttaaaaatactttag |
12427427 |
T |
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| Q |
115 |
gttttaaataatagcaactagtaaaaaacaataatagcaacttg |
158 |
Q |
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| T |
12427426 |
gttttaaataatagcaactactaaaaaacaataatagcaacttg |
12427383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 12183115 - 12183071
Alignment:
| Q |
62 |
ttagtggtctagtgtaaaagaataaaaatattttaggtttaaaaa |
106 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12183115 |
ttagtggtctagtgtaaaagaataaaaatactttaggtttaaaaa |
12183071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 12427543 - 12427499
Alignment:
| Q |
62 |
ttagtggtctagtgtaaaagaataaaaatattttaggtttaaaaa |
106 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12427543 |
ttagtggtctagtgtaaaagaataaaaatactttaggtttaaaaa |
12427499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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