View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19529_low_51 (Length: 217)
Name: NF19529_low_51
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 11157067 - 11156870
Alignment:
| Q |
1 |
attaagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctggattgaggaggagttgttggaggcaaag |
100 |
Q |
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| T |
11157067 |
attaagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctggattgaggaggagttgttggaggcaaag |
11156968 |
T |
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| Q |
101 |
gggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaagt |
198 |
Q |
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| T |
11156967 |
gggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactggaaatgaaccattttgtaaaagtgaaggtgaacaagt |
11156870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 11164028 - 11163828
Alignment:
| Q |
1 |
attaagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctgg---attgaggaggagttgttggaggca |
97 |
Q |
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| T |
11164028 |
attaagaaccctaataaagcatatgaaaaaaccctaatagatataagaagagaagaagaagtttgtaacctggtgaatcgaggaggagctgttggagaca |
11163929 |
T |
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| Q |
98 |
aaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaag |
197 |
Q |
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| T |
11163928 |
aaggggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaagatgaacaag |
11163829 |
T |
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| Q |
198 |
t |
198 |
Q |
| |
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| |
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| T |
11163828 |
t |
11163828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 11176746 - 11176672
Alignment:
| Q |
102 |
ggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccatttt |
176 |
Q |
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|||| ||||||||||||||||||||||| |||||||| || | ||||||| |||||| || |||||||||||||| |
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| T |
11176746 |
ggataacatcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatgaaccatttt |
11176672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 4703888 - 4703989
Alignment:
| Q |
97 |
aaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaa |
196 |
Q |
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||||||||| |||||||||||||||||||||| |||||||| || |||||||| |||||| | |||||| |||||||||| ||||||| |||||| |
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| T |
4703888 |
aaaggggatggcatcccatggagattggttaagctgacaaacgtgcatttgaaaaggttcaaccggtaatgaatcattttgtagtagtgaagacgaacaa |
4703987 |
T |
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| Q |
197 |
gt |
198 |
Q |
| |
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|| |
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|
| T |
4703988 |
gt |
4703989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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