View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19529_low_59 (Length: 206)

Name: NF19529_low_59
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19529_low_59
NF19529_low_59
[»] chr1 (3 HSPs)
chr1 (95-198)||(34581057-34581160)
chr1 (1-52)||(34580961-34581012)
chr1 (137-195)||(35125063-35125121)
[»] chr6 (2 HSPs)
chr6 (137-188)||(32602580-32602631)
chr6 (137-185)||(32592438-32592486)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 34581057 - 34581160
Alignment:
Q  95 tggatatatctcaattgaaaatggataagaataagggtagcttaccccatgggaggagtacgtccaagtccattttgcaacatataactcttaacattct 194  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34581057 tggatatatctcaattaaaaatggataagaataagggtagcttaccccatgggaggagtacgtccaagtccattttgcaacatataactcttaacattct 34581156  T
Q  195 tctc 198  Q
    ||||    
T  34581157 tctc 34581160  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34580961 - 34581012
Alignment:
Q  1 accatacctgattttgtttcttaaaaatttaagacacgtatatgtgtgtgtt 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34580961 accatacctgattttgtttcttaaaaatttaagacacgtatatgtgtgtgtt 34581012  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 35125063 - 35125121
Alignment:
Q  137 taccccatgggaggagtacgtccaagtccattttgcaacatataactcttaacattctt 195  Q
    |||||||||||||| ||  | |||||||||||||| |||| |||||||||||| |||||    
T  35125063 taccccatgggaggtgtctgaccaagtccattttgtaacaaataactcttaaccttctt 35125121  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 32602580 - 32602631
Alignment:
Q  137 taccccatgggaggagtacgtccaagtccattttgcaacatataactcttaa 188  Q
    |||||||||||||| ||  | |||||||||||||||||||||||||||||||    
T  32602580 taccccatgggaggtgtctgaccaagtccattttgcaacatataactcttaa 32602631  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 32592438 - 32592486
Alignment:
Q  137 taccccatgggaggagtacgtccaagtccattttgcaacatataactct 185  Q
    |||||||||||||| ||  | ||||||||||||||||||||||||||||    
T  32592438 taccccatgggaggtgtctgaccaagtccattttgcaacatataactct 32592486  T

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