View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19529_low_9 (Length: 624)
Name: NF19529_low_9
Description: NF19529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19529_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 569; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 15 - 610
Target Start/End: Original strand, 2097940 - 2098533
Alignment:
| Q |
15 |
aataatgttgctgagtatcgcgcattgattttaggactgaaacaagctgtaaggaaaggatataggaacatcactgtctacggagattccgaacttgtta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2097940 |
aataatgttgctgagtatcgcgcattgattttaggactgaaacaagctgtaaggaaaggatataggaacatcactgtctacggagattccgaacttgtta |
2098039 |
T |
|
| Q |
115 |
tcaatcaggtatgttcatagagtatgcattattatctttaacttaaaattacagtacatttgaatgttgatatatggaaaacataatccaattgttcata |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2098040 |
tcaatcaggtatgttcatagagtatgcattattatctttaacttaaaattacagtacatttgaatgttgatat--ggaaaacataatccaattgttcata |
2098137 |
T |
|
| Q |
215 |
aaaaagatacatggtgattcgataattctgagcaatgacacgatttctttgttaaaacaaccatggaactatccccttcctagacaaaagaaaggcttct |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2098138 |
aaaaagatacatggtgattcgataattctgagcgatgacacgatttctttgttaaaacaaccatggaactatccccttcctagaaaaaagaaaggcttct |
2098237 |
T |
|
| Q |
315 |
ctgaattcatttagtttcatattcttcctaattggttagatattgttaagatttactcaccaccactcttcattgtttatacatttttcttttctaaaca |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2098238 |
ctgaattcatttagtttcatattcttcctaattggttagatattgttaagatttactcaccactactcttcattgtttatacatttttcttttctaaaca |
2098337 |
T |
|
| Q |
415 |
atttaccaacatatgttattgttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgcaatgaggccttggagctaag |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2098338 |
atttaccaacatatgttattgttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgcaatgaggccttggagctaag |
2098437 |
T |
|
| Q |
515 |
ggataactttcacttgttcagcatcttttacattcctagggtatttatttaagttgctcctttctcaattgagcattgctttgtgaagttgaaaac |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2098438 |
ggataactttcacttgttcagcatcttttacattcctagggtatttatttaagttgctcctttctcaattgagcattgctttgtgaagttggaaac |
2098533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 205 - 565
Target Start/End: Original strand, 2106582 - 2106946
Alignment:
| Q |
205 |
attgttcataaaaaagatacatggtgattcgataattctgagcaatgacacgatttctttgtt-aaaacaaccatggaactatccccttcct----agac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||| |||||| |||||||||||| |||||||| ||||||||||||| ||| | | | |
|
|
| T |
2106582 |
attgttcataaaaaagatacatggtgatttgataattctaagcgatgacatgatttctttgttaaaaacaactatggaactatccctttcttaaaaaaaa |
2106681 |
T |
|
| Q |
300 |
aaaagaaaggcttctctgaattcatttagtttcatattc-ttcctaattggttagatattgttaagatttactcaccaccactcttcattgtttatacat |
398 |
Q |
| |
|
|||| ||||||| || |||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |
|
|
| T |
2106682 |
aaaaaaaaggctcctttgaattcatttagttttatatcctttcctaattggttagatattgttaagatttactcattgctactcttcattttttatacat |
2106781 |
T |
|
| Q |
399 |
ttttcttttctaaacaatttaccaacatatgttattgttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgcaatg |
498 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2106782 |
ttttcttttctaaacaatttaccaac--atgttattgttttgcaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgcaatg |
2106879 |
T |
|
| Q |
499 |
aggccttggagctaagggataactttcacttgttcagcatcttttacattcctagggtatttattta |
565 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2106880 |
aggctttggagctaagggataactttcacttgttcagcatcttttacattcctagggtatatattta |
2106946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 2106429 - 2106544
Alignment:
| Q |
15 |
aataatgttgctgagtatcgcgcattgattttaggactgaaacaagctgtaaggaaaggatataggaacatcactgtctacggagattccgaacttgtta |
114 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2106429 |
aataatgttgctgagtatcgtgcactgattttaggactgaaacaagctctaaggaaaggatataggaacatcactgtctacggagactccgaacttgtta |
2106528 |
T |
|
| Q |
115 |
tcaatcaggtatgttc |
130 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2106529 |
tcaatcaggtctgttc |
2106544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 396 - 528
Target Start/End: Original strand, 2088541 - 2088674
Alignment:
| Q |
396 |
catttttcttttctaaacaatttaccaacatatgttattg-ttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgc |
494 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||||||||| ||||||||||| | || |||| ||| |||||| ||||||| ||||||||| |||||| |
|
|
| T |
2088541 |
catttttcttttctaaacaatatactaagatatgttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgt |
2088640 |
T |
|
| Q |
495 |
aatgaggccttggagctaagggataactttcact |
528 |
Q |
| |
|
|| ||||| |||||||| | || | ||||||||| |
|
|
| T |
2088641 |
aacgaggctttggagctgaagggtgactttcact |
2088674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 2041976 - 2042091
Alignment:
| Q |
15 |
aataatgttgctgagtatcgcgcattgattttaggactgaaacaagctgtaaggaaaggatataggaacatcactgtctacggagattccgaacttgtta |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||| |||| | || ||||||||| ||||||| ||| | ||||| || |||||||||| |
|
|
| T |
2041976 |
aataatgttgctgagtatcgcgctttgatcttaggattgaattaagcaatccagagaggatatagaaacatcaatgtgcaaggagactcagaacttgtta |
2042075 |
T |
|
| Q |
115 |
tcaatcaggtatgttc |
130 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2042076 |
tcaatcaggtttgttc |
2042091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 2088386 - 2088432
Alignment:
| Q |
15 |
aataatgttgctgagtatcgcgcattgattttaggactgaaacaagc |
61 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
2088386 |
aataatgttgctgagtatcgcgctttgattttaggaatgaaacaagc |
2088432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 2054054 - 2054163
Alignment:
| Q |
15 |
aataatgttgctgagtatcgcgcattgattttaggactgaaacaagctgtaaggaaaggatataggaacatcactgtctacggagattccgaacttgtta |
114 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| || ||||||||||||||| | | ||||||| || |||||||| ||| | ||||| ||| | ||||||| |
|
|
| T |
2054054 |
aataacgttgctgagtaccgcgctttgatattgggactgaaacaagctatcaataaaggatttaagaacatcagtgtgcaaggagactccaaccttgtta |
2054153 |
T |
|
| Q |
115 |
tcaatcaggt |
124 |
Q |
| |
|
|||||||||| |
|
|
| T |
2054154 |
tcaatcaggt |
2054163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 2047859 - 2047899
Alignment:
| Q |
333 |
atattcttcctaattggttagatattgttaagatttactca |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2047859 |
atattcttcctaattggttagatattgttaatatttactca |
2047899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 446
Target Start/End: Original strand, 2065558 - 2065606
Alignment:
| Q |
399 |
ttttcttttctaaacaatttaccaacatatgtta-ttgttttgcaacag |
446 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2065558 |
ttttctttgctaaacaatttaccaacatatgttatttgttttgcaacag |
2065606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 562 - 610
Target Start/End: Original strand, 2106965 - 2107013
Alignment:
| Q |
562 |
tttaagttgctcctttctcaattgagcattgctttgtgaagttgaaaac |
610 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2106965 |
tttaagttgcatctttctcaattgagcactgctttgtgaagttgaaaac |
2107013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 2082854 - 2082911
Alignment:
| Q |
300 |
aaaagaaaggcttctctgaattcatttagtttcatattcttcctaattggttagatatt |
358 |
Q |
| |
|
|||||||||| |||| || |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
2082854 |
aaaagaaaggtttctttggattcatttagtt-catattcatcctaattggttagatatt |
2082911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 528
Target Start/End: Original strand, 2048154 - 2048225
Alignment:
| Q |
457 |
tatggaacatcaacaatgctcatttaaggaacttatgcaatgaggccttggagctaagggataactttcact |
528 |
Q |
| |
|
||||||| |||||||| | | |||||||||||||||| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
2048154 |
tatggaaaatcaacaacccgcgtttaaggaacttatgcgatgaggctttggagctagcagataactttcact |
2048225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 2136313 - 2136276
Alignment:
| Q |
24 |
gctgagtatcgcgcattgattttaggactgaaacaagc |
61 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
2136313 |
gctgagtatcgagcattgattttaggtctgaaacaagc |
2136276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 2135553 - 2135497
Alignment:
| Q |
390 |
tttatacatttttcttttctaaacaatttaccaacatatgttattgttttgcaacag |
446 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
2135553 |
tttatgcatttttcttttttaaacaatttaggcgcatatgttattgctttgcaacag |
2135497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University